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  • Coefficient and standard error interpretation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/coefficient-and-standard-error-interpretation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Count data normalization rna seq

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/count-data-normalization-rna-seq Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Count matrix format validation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/count-matrix-format-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Dask array lazy evaluation verification

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/dask-array-lazy-evaluation-verification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Dask array materialization and collection

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/dask-array-materialization-and-collection Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Deseq2 object initialization from transcript data

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/deseq2-object-initialization-from-transcript-data Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Deseqdataset construction from quantification

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/deseqdataset-construction-from-quantification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Design matrix construction experiments

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/design-matrix-construction-experiments Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Differential expression empirical bayes moderation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/differential-expression-empirical-bayes-moderation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Differential expression result interpretation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/differential-expression-result-interpretation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Differential gene expression analysis

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/differential-gene-expression-analysis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Differential splicing statistical testing

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/differential-splicing-statistical-testing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Dimensionality reduction via pca

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/dimensionality-reduction-via-pca Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Dimensionality reduction via reverse pca

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/dimensionality-reduction-via-reverse-pca Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Dispersion estimation negative binomial

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/dispersion-estimation-negative-binomial Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Edger dgeobject construction

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/edger-dgeobject-construction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Empirical bayes variance estimation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/empirical-bayes-variance-estimation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Euclidean distance computation approximation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/euclidean-distance-computation-approximation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Evidence linking

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/evidence-linking Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Expert review preparation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/expert-review-preparation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Factor design specification

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/factor-design-specification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Fold change interpretation and ranking

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/fold-change-interpretation-and-ranking Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene expression linear modeling

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-expression-linear-modeling Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene expression log transformation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-expression-log-transformation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene expression matrix normalization

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-expression-matrix-normalization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene expression ranking preparation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-expression-ranking-preparation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene expression statistical testing

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-expression-statistical-testing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene filtering by expression level

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-filtering-by-expression-level Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene identifier deduplication and filtering

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-identifier-deduplication-and-filtering Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene length offset matrix computation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-length-offset-matrix-computation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene level summarization from transcripts

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-level-summarization-from-transcripts Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene set enrichment analysis

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-set-enrichment-analysis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gene set enrichment scoring coregulation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gene-set-enrichment-scoring-coregulation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Genomic database identifier mapping

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/genomic-database-identifier-mapping Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Git repository cloning and fork management

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/git-repository-cloning-and-fork-management Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Graph builder subclassing squidpy

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/graph-builder-subclassing-squidpy Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gsea result interpretation visualization

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gsea-result-interpretation-visualization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gtf file parsing

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/gtf-file-parsing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hatch environment configuration and activation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/hatch-environment-configuration-and-activation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Highly variable gene selection

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/highly-variable-gene-selection Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hypothesis weighting statistical control

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/hypothesis-weighting-statistical-control Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Image feature extraction from tissue sections

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/image-feature-extraction-from-tissue-sections Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Independent filtering multiple testing correction

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/independent-filtering-multiple-testing-correction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Independent filtering optimization

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/independent-filtering-optimization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Index construction determinism

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/index-construction-determinism Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Inferential replicate handling

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/inferential-replicate-handling Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Isoform structure annotation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/isoform-structure-annotation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Isoform usage bias correction

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/isoform-usage-bias-correction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • K mer orientation bug diagnosis

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/k-mer-orientation-bug-diagnosis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • K nearest neighbor graph construction

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/k-nearest-neighbor-graph-construction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Lazy computation orchestration with dask

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/lazy-computation-orchestration-with-dask Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Leiden clustering of cells

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/leiden-clustering-of-cells Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Leiden clustering partitioning

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/leiden-clustering-partitioning Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Linear model fitting for gene expression

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/linear-model-fitting-for-gene-expression Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Local splicing event detection

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/local-splicing-event-detection Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Log fold change shrinkage estimation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/log-fold-change-shrinkage-estimation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Ma plot visualization and interpretation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/ma-plot-visualization-and-interpretation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Mapping agreement cross tool validation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/mapping-agreement-cross-tool-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Marker gene identification by clustering

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/marker-gene-identification-by-clustering Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Matplotlib plot reference image comparison

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/matplotlib-plot-reference-image-comparison Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder