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The catalog

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  • Matrix equivalence validation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/matrix-equivalence-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Memory efficient single cell computation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/memory-efficient-single-cell-computation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Method comparison differential calls

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/method-comparison-differential-calls Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Microarray expression data loading

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/microarray-expression-data-loading Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Microarray expression normalization log quantile

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/microarray-expression-normalization-log-quantile Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Moderated t statistic computation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/moderated-t-statistic-computation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Monte carlo p value estimation adaptive

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/monte-carlo-p-value-estimation-adaptive Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Multi conditional data coregulation scoring

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/multi-conditional-data-coregulation-scoring Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Multiple testing correction visualization

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/multiple-testing-correction-visualization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Nearest neighbor graph construction pynndescent

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/nearest-neighbor-graph-construction-pynndescent Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Neighborhood enrichment computation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/neighborhood-enrichment-computation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Oarfish quantification format handling

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/oarfish-quantification-format-handling Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Overdispersion estimation validation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/overdispersion-estimation-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • P value adjustment methodology

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/p-value-adjustment-methodology Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Paga graph abstraction

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/paga-graph-abstraction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Paired end read quantification

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/paired-end-read-quantification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Pathway activity correlation analysis

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/pathway-activity-correlation-analysis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Pathway cell type association validation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/pathway-cell-type-association-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Pathway enrichment statistical ranking

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/pathway-enrichment-statistical-ranking Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Pathway set enrichment analysis

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/pathway-set-enrichment-analysis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Pearson correlation analysis genomics

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/pearson-correlation-analysis-genomics Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Pearson correlation computation across tools

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/pearson-correlation-computation-across-tools Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Per read mapping agreement assessment

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/per-read-mapping-agreement-assessment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Precision weight calculation rna seq

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/precision-weight-calculation-rna-seq Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Principal component analysis dimensionality reduction

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/principal-component-analysis-dimensionality-reduction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Prior distribution fitting for genomics

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/prior-distribution-fitting-for-genomics Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Psi calculation from isoform abundance

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/psi-calculation-from-isoform-abundance Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Psi matrix loading and normalization

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/psi-matrix-loading-and-normalization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Pytest test suite execution and result interpretation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/pytest-test-suite-execution-and-result-interpretation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Python data structure verification

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/python-data-structure-verification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Quantification output parsing

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/quantification-output-parsing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Read mapping rate calculation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/read-mapping-rate-calculation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Reduction plot interpretation and visualization

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/reduction-plot-interpretation-and-visualization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Reproducibility gap detection

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/reproducibility-gap-detection Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Results table extraction and comparison

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/results-table-extraction-and-comparison Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rna seq abundance matrix handling

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rna-seq-abundance-matrix-handling Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rna seq count matrix generation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rna-seq-count-matrix-generation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rna seq count normalization tmm

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rna-seq-count-normalization-tmm Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rna seq count normalization

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rna-seq-count-normalization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rna seq differential expression analysis

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rna-seq-differential-expression-analysis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rna seq experimental design specification

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rna-seq-experimental-design-specification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rna seq quantification selective alignment

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rna-seq-quantification-selective-alignment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rna seq quantification validation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rna-seq-quantification-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rna seq read mapping parameter tuning

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rna-seq-read-mapping-parameter-tuning Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Rnaseq count matrix analysis

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/rnaseq-count-matrix-analysis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Salmon output parsing

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/salmon-output-parsing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Salmon quantification output verification

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/salmon-quantification-output-verification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Sam bam mapping record inspection

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/sam-bam-mapping-record-inspection Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Sam record parsing and validation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/sam-record-parsing-and-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Sample metadata preparation and assignment

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/sample-metadata-preparation-and-assignment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Scanpy preprocessing pipeline execution

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/scanpy-preprocessing-pipeline-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Scientific task formulation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/scientific-task-formulation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Seed representation variant comparison

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/seed-representation-variant-comparison Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Selective alignment parameter tuning

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/selective-alignment-parameter-tuning Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Selective alignment sensitivity evaluation

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/selective-alignment-sensitivity-evaluation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Seurat workflow orchestration for scrnaseq

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/seurat-workflow-orchestration-for-scrnaseq Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Single cell graph construction neighborhood

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/single-cell-graph-construction-neighborhood Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Single cell rna seq normalization

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/single-cell-rna-seq-normalization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Single cell rna seq quality control and normalization

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/single-cell-rna-seq-quality-control-and-normalization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Sparse matrix csr format assembly

    HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/sparse-matrix-csr-format-assembly Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder