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  • Duplicate read filtering and normalization

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/duplicate-read-filtering-and-normalization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Editable development mode installation and verification

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/editable-development-mode-installation-and-verification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Eigenvector digitization into compartment bins

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/eigenvector-digitization-into-compartment-bins Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Encode hic pipeline execution

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/encode-hic-pipeline-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • End to end bioinformatics pipeline testing

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/end-to-end-bioinformatics-pipeline-testing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Epic array simulation benchmark

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/epic-array-simulation-benchmark Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Epigenetic sample stratification

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/epigenetic-sample-stratification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Fragment based count matrix generation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/fragment-based-count-matrix-generation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Fragment file validation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/fragment-file-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Fragment length estimation cross correlation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/fragment-length-estimation-cross-correlation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Fragment length estimation from read pairs

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/fragment-length-estimation-from-read-pairs Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Fragment length prediction and extension

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/fragment-length-prediction-and-extension Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gc content bias calculation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/gc-content-bias-calculation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Genome alignment and contact matrix construction

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/genome-alignment-and-contact-matrix-construction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Genome sequence matching for nucleotide patterns

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/genome-sequence-matching-for-nucleotide-patterns Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Genomic coordinate conversion

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/genomic-coordinate-conversion Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Genomic feature annotation overlap

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/genomic-feature-annotation-overlap Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Genomic loop call interpretation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/genomic-loop-call-interpretation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Genomic region annotation integration

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/genomic-region-annotation-integration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hi c coverage track computation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hi-c-coverage-track-computation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hi c expected value calculation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hi-c-expected-value-calculation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hi c fastq read preprocessing

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hi-c-fastq-read-preprocessing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hi c fastq to contact map pipeline

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hi-c-fastq-to-contact-map-pipeline Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hi c insulation score calculation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hi-c-insulation-score-calculation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hi c map artifact validation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hi-c-map-artifact-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hi c matrix normalization pipeline setup

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hi-c-matrix-normalization-pipeline-setup Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hi c normalization and bias correction

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hi-c-normalization-and-bias-correction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hic contact map feature annotation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hic-contact-map-feature-annotation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hic map format validation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hic-map-format-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hierarchical dendrogram interpretation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hierarchical-dendrogram-interpretation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hpc cluster scheduler configuration

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/hpc-cluster-scheduler-configuration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Illumina 450k epic dataset loading

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/illumina-450k-epic-dataset-loading Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Illumina array data processing epic

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/illumina-array-data-processing-epic Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Illumina methylation array preprocessing

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/illumina-methylation-array-preprocessing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Interactive visualization interpretation methylation results

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/interactive-visualization-interpretation-methylation-results Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Iterative lsi dimensionality reduction

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/iterative-lsi-dimensionality-reduction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Juicer cli tool execution

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/juicer-cli-tool-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Juicer pipeline configuration and execution

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/juicer-pipeline-configuration-and-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Kilobase resolution contact map analysis

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/kilobase-resolution-contact-map-analysis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Kilobase resolution genomics analysis

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/kilobase-resolution-genomics-analysis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Kmer annotation matrix assembly

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/kmer-annotation-matrix-assembly Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Kmer motif synergy assessment

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/kmer-motif-synergy-assessment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Large scale single cell matrix loading

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/large-scale-single-cell-matrix-loading Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Leiden clustering resolution optimization

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/leiden-clustering-resolution-optimization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Library module organization and accessibility

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/library-module-organization-and-accessibility Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Local background bias estimation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/local-background-bias-estimation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Local background estimation multiple scales

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/local-background-estimation-multiple-scales Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Macs3 subcommand chaining

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/macs3-subcommand-chaining Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Makefile based build system configuration

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/makefile-based-build-system-configuration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Memory profiling and monitoring

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/memory-profiling-and-monitoring Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Method comparison statistical summarization

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/method-comparison-statistical-summarization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Methylation batch effect detection

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/methylation-batch-effect-detection Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Methylation data clustering

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/methylation-data-clustering Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Methylation hyper hypo classification

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/methylation-hyper-hypo-classification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Methylation object merging and union

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/methylation-object-merging-and-union Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Methylation probe count validation

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/methylation-probe-count-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Methylation region genomic context assignment

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/methylation-region-genomic-context-assignment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Methylation region identification

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/methylation-region-identification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Methylbase object handling

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/methylbase-object-handling Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Methylkit database mode configuration

    HolobiomicsLab/asb-skill-collections/collections/epigenomics/v1/skills/methylkit-database-mode-configuration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder