Setup & scaffolding
5,956 rows, by stacks then stars
Ecosystem remote sensing starter
ma-compbio-lab/SkillFoundry/skills/ecology-evolution-and-biodiversity/ecosystem-remote-sensing-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/ecology-evolution-and-biodiversity/gbif-dataset-search-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Gbif species occurrence search starter
ma-compbio-lab/SkillFoundry/skills/ecology-evolution-and-biodiversity/gbif-species-occurrence-search-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Population dynamics and ecological forecasting starter
ma-compbio-lab/SkillFoundry/skills/ecology-evolution-and-biodiversity/population-dynamics-and-ecological-forecasting-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Scikitbio tree comparison starter
ma-compbio-lab/SkillFoundry/skills/ecology-evolution-and-biodiversity/scikitbio-tree-comparison-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Wildlife sensing and bioacoustics starter
ma-compbio-lab/SkillFoundry/skills/ecology-evolution-and-biodiversity/wildlife-sensing-and-bioacoustics-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/atac-seq-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/chip-seq-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Cooler hic matrix summary starter
ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/cooler-hic-matrix-summary-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/cut-run-cut-tag-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/footprinting-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/macs3-peak-calling-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/methylation-analysis-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/motif-analysis-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/multiome-integration-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Bcftools variant filtering starter
ma-compbio-lab/SkillFoundry/skills/genomics/bcftools-variant-filtering-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/comparative-genomics-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Fastqc multiqc read qc starter
ma-compbio-lab/SkillFoundry/skills/genomics/fastqc-multiqc-read-qc-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/fine-mapping-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/germline-pipelines-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/gwas-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/long-read-genomics-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/minimap2-read-mapping-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/phylogenomics-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Polygenic risk scoring starter
ma-compbio-lab/SkillFoundry/skills/genomics/polygenic-risk-scoring-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/pysam-sam-bam-summary-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/quantification-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/somatic-pipelines-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Sourmash signature compare starter
ma-compbio-lab/SkillFoundry/skills/genomics/sourmash-signature-compare-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/genomics/variant-calling-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/hpc/cluster-safe-installs-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/hpc/cpu-memory-tuning-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/hpc/gpu-jobs-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/hpc/i-o-aware-workflows-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Interactive debug workflows starter
ma-compbio-lab/SkillFoundry/skills/hpc/interactive-debug-workflows-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/hpc/multi-node-jobs-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/hpc/scratch-space-usage-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/hpc/slurm-job-array-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Slurm monitoring accounting starter
ma-compbio-lab/SkillFoundry/skills/hpc/slurm-monitoring-accounting-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/cell-tracking-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/microscopy-pipelines-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Multi modal image omics integration starter
ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/multi-modal-image-omics-integration-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Pathology histology workflows starter
ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/pathology-histology-workflows-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Representation learning for scientific images starter
ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/representation-learning-for-scientific-images-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Skimage otsu segmentation starter
ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/skimage-otsu-segmentation-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Generative design for materials starter
ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/generative-design-for-materials-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Laboratory to simulation data linkage starter
ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/laboratory-to-simulation-data-linkage-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Materials benchmark datasets starter
ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/materials-benchmark-datasets-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Matminer property regression starter
ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/matminer-property-regression-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Matminer toy property prediction starter
ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/matminer-toy-property-prediction-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Phase stability analysis starter
ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/phase-stability-analysis-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Pymatgen crystal structure parsing starter
ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/pymatgen-crystal-structure-parsing-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Surrogate models for simulation starter
ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/surrogate-models-for-simulation-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Datasketch resource deduplication starter
ma-compbio-lab/SkillFoundry/skills/meta-maintenance/datasketch-resource-deduplication-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/meta-maintenance/deprecation-migration-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Documentation quality improvement starter
ma-compbio-lab/SkillFoundry/skills/meta-maintenance/documentation-quality-improvement-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/meta-maintenance/freshness-audits-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Precommit regression testing starter
ma-compbio-lab/SkillFoundry/skills/meta-maintenance/precommit-regression-testing-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
Rapidfuzz skill deduplication starter
ma-compbio-lab/SkillFoundry/skills/meta-maintenance/rapidfuzz-skill-deduplication-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.
ma-compbio-lab/SkillFoundry/skills/meta-maintenance/registry-link-audit-starter Skill
36★ repoA framework for discovering, compiling, and validating reusable skills for scientific agents.