1,109 of these skill files have been read, by 811 distinct authors, and what they tell an agent counted. What Architecture & codebase authors agree on, and what they forbid

• 5221

  Regulatory network inference starter

  ma-compbio-lab/SkillFoundry/skills/systems-biology/regulatory-network-inference-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5222

  String interaction partners starter

  ma-compbio-lab/SkillFoundry/skills/systems-biology/string-interaction-partners-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5223

  Bulk rna seq qc and normalization starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/bulk-rna-seq-qc-and-normalization-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5224

  Cellxgene census atlas query starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/cellxgene-census-atlas-query-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5225

  Isoform transcript level analysis starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/isoform-transcript-level-analysis-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5226

  Perturb seq starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/perturb-seq-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5227

  Pseudobulk analysis starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/pseudobulk-analysis-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5228

  Pydeseq2 differential expression starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/pydeseq2-differential-expression-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5229

  Rna velocity starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/rna-velocity-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5230

  Scanpy cell type annotation starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-cell-type-annotation-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5231

  Scanpy combat batch correction starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-combat-batch-correction-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5232

  Scanpy dpt trajectory starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-dpt-trajectory-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5233

  Scanpy qc starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-qc-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5234

  Scanpy ranked genes starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-ranked-genes-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5235

  Spatial transcriptomics starter

  ma-compbio-lab/SkillFoundry/skills/transcriptomics/spatial-transcriptomics-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5236

  Dash scientific dashboard starter

  ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/dash-scientific-dashboard-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5237

  Figure recreation from papers starter

  ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/figure-recreation-from-papers-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5238

  Matplotlib publication plot starter

  ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/matplotlib-publication-plot-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5239

  Mkdocs summary catalog starter

  ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/mkdocs-summary-catalog-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5240

  Plotly interactive report starter

  ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/plotly-interactive-report-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5241

  Quarto notebook report starter

  ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/quarto-notebook-report-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5242

  Skill browser mindmap generation starter

  ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/skill-browser-mindmap-generation-starter · Skill

  36★ repo

  A framework for discovering, compiling, and validating reusable skills for scientific agents.

• 5243

  Dangerous config file protection

  ychampion/cskill-agents/agents/claude-code/skills/dangerous-config-file-protection · Skill

  36★ repo

  Agent skills for coding CLIs, multi-agent runtimes, context engines, MCP extensions, and terminal tooling. Instead of using claude code's source code, give your agent skills to create your own!

• 5244

  Privacy redacted repl bridge system init

  ychampion/cskill-agents/agents/claude-code/skills/privacy-redacted-repl-bridge-system-init · Skill

  36★ repo

  Agent skills for coding CLIs, multi-agent runtimes, context engines, MCP extensions, and terminal tooling. Instead of using claude code's source code, give your agent skills to create your own!

• 5245

  Shared system init shape parity

  ychampion/cskill-agents/agents/claude-code/skills/shared-system-init-shape-parity · Skill

  36★ repo

  Agent skills for coding CLIs, multi-agent runtimes, context engines, MCP extensions, and terminal tooling. Instead of using claude code's source code, give your agent skills to create your own!

• 5246

  Dangerous config file protection

  ychampion/cskill-agents/agents/codex/skills/dangerous-config-file-protection · Skill

  36★ repo

  Agent skills for coding CLIs, multi-agent runtimes, context engines, MCP extensions, and terminal tooling. Instead of using claude code's source code, give your agent skills to create your own!

• 5247

  Privacy redacted repl bridge system init

  ychampion/cskill-agents/agents/codex/skills/privacy-redacted-repl-bridge-system-init · Skill

  36★ repo

  Agent skills for coding CLIs, multi-agent runtimes, context engines, MCP extensions, and terminal tooling. Instead of using claude code's source code, give your agent skills to create your own!

• 5248

  Shared system init shape parity

  ychampion/cskill-agents/agents/codex/skills/shared-system-init-shape-parity · Skill

  36★ repo

  Agent skills for coding CLIs, multi-agent runtimes, context engines, MCP extensions, and terminal tooling. Instead of using claude code's source code, give your agent skills to create your own!

• 5249

  Dangerous config file protection

  ychampion/cskill-agents/skills/dangerous-config-file-protection · Skill

  36★ repo

  Agent skills for coding CLIs, multi-agent runtimes, context engines, MCP extensions, and terminal tooling. Instead of using claude code's source code, give your agent skills to create your own!

• 5250

  Privacy redacted repl bridge system init

  ychampion/cskill-agents/skills/privacy-redacted-repl-bridge-system-init · Skill

  36★ repo

  Agent skills for coding CLIs, multi-agent runtimes, context engines, MCP extensions, and terminal tooling. Instead of using claude code's source code, give your agent skills to create your own!

• 5251

  Shared system init shape parity

  ychampion/cskill-agents/skills/shared-system-init-shape-parity · Skill

  36★ repo

  Agent skills for coding CLIs, multi-agent runtimes, context engines, MCP extensions, and terminal tooling. Instead of using claude code's source code, give your agent skills to create your own!

• 5252

  Setup

  theogbrand/yoink/plugins/yoink/skills/setup · Skill

  35★ repo

  yoink is an AI agent that removes complex dependencies by reimplementing only what you need.

• 5253

  Stitch setup

  gabelul/stitch-kit/skills/stitch-setup · Skill

  35★ repo

  Your coding agent designs terrible UI. stitch-kit wires it into Google Stitch MCP and teaches it the whole pipeline — ideation, screen generation, design systems, production components.

• 5254

  Stitch ui prompt architect

  gabelul/stitch-kit/skills/stitch-ui-prompt-architect · Skill

  35★ repo

  Your coding agent designs terrible UI. stitch-kit wires it into Google Stitch MCP and teaches it the whole pipeline — ideation, screen generation, design systems, production components.

• 5255

  Solidifier

  FernandoJRR/solidifier/copilot/solidifier · Skill

  35★ repo

  SOLID principles and design patterns for backend code — applied with restraint. Skill for Claude Code, OpenCode, GitHub Copilot, and OpenAI Codex.

• 5256

  Solidifier

  FernandoJRR/solidifier/opencode/solidifier · Skill

  35★ repo

  SOLID principles and design patterns for backend code — applied with restraint. Skill for Claude Code, OpenCode, GitHub Copilot, and OpenAI Codex.

• 5257

  Onboarding

  Aicoo-Team/AICOO-Skills/skills/onboarding · Skill

  35★ repo

  An official set of skills to share, maintain and connect personal AI Agents.

• 5258

  Refactoring code

  alexei-led/cc-thingz/dist/claude/dev-flow/skills/refactoring-code · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5259

  Evolving config

  alexei-led/cc-thingz/dist/claude/discovery/skills/evolving-config · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5260

  Refactoring code

  alexei-led/cc-thingz/dist/codex/dev-flow/skills/refactoring-code · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5261

  Evolving config

  alexei-led/cc-thingz/dist/codex/discovery/skills/evolving-config · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5262

  Refactoring code

  alexei-led/cc-thingz/dist/copilot/dev-flow/skills/refactoring-code · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5263

  Evolving config

  alexei-led/cc-thingz/dist/copilot/discovery/skills/evolving-config · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5264

  Refactoring code

  alexei-led/cc-thingz/dist/cursor/dev-flow/skills/refactoring-code · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5265

  Evolving config

  alexei-led/cc-thingz/dist/cursor/discovery/skills/evolving-config · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5266

  Refactoring code

  alexei-led/cc-thingz/dist/grok/dev-flow/skills/refactoring-code · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5267

  Evolving config

  alexei-led/cc-thingz/dist/grok/discovery/skills/evolving-config · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5268

  Evolving config

  alexei-led/cc-thingz/dist/pi/skills/evolving-config · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5269

  Refactoring code

  alexei-led/cc-thingz/dist/pi/skills/refactoring-code · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5270

  Evolving config

  alexei-led/cc-thingz/src/skills/evolving-config · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5271

  Refactoring code

  alexei-led/cc-thingz/src/skills/refactoring-code · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5272

  Reviewing code

  alexei-led/cc-thingz/src/skills/reviewing-code · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5273

  Using git worktrees

  alexei-led/cc-thingz/src/skills/using-git-worktrees · Skill

  35★ repo

  Portable skills, agents, hooks, and Pi extensions for Claude Code, Codex CLI, Copilot, Cursor, Grok, and Pi.

• 5274

  Visual architect

  proyecto26/sherlock-ai-plugin/skills/visual-architect · Skill

  34★ repo

  Sherlock AI plugin; Research & Implementation Supercharged with a curated list of AI skills

• 5275

  Research repo

  scdenney/open-science-skills/plugin/skills/research-repo · Skill

  no license34★ repo

  Agentic skills for Claude Code and Codex, built from published social-science methods sources. Covers experimental design, computational text analysis, manuscript QA, and transparent reporting.

• 5276

  Threat modeling

  UnitOneAI/SecuritySkills/skills/appsec/threat-modeling · Skill

  34★ repo

  Open-source security skills for AI coding agents. Grounded in OWASP, NIST, MITRE ATT&CK, CIS. Works with Claude Code, Gemini CLI, Cursor, Codex CLI, OpenClaw, Kiro.

• 5277

  Dast config

  UnitOneAI/SecuritySkills/skills/devsecops/dast-config · Skill

  34★ repo

  Open-source security skills for AI coding agents. Grounded in OWASP, NIST, MITRE ATT&CK, CIS. Works with Claude Code, Gemini CLI, Cursor, Codex CLI, OpenClaw, Kiro.

• 5278

  Sast config

  UnitOneAI/SecuritySkills/skills/devsecops/sast-config · Skill

  34★ repo

  Open-source security skills for AI coding agents. Grounded in OWASP, NIST, MITRE ATT&CK, CIS. Works with Claude Code, Gemini CLI, Cursor, Codex CLI, OpenClaw, Kiro.

• 5279

  Setup

  saadshahd/moo.md/sound/skills/setup · Skill

  33★ repo

  Stay present with AI. A Claude Code plugin that keeps you understanding what you sign to own.

• 5280

  Sendmux getting started

  Sendmux/skills/plugins/sendmux/skills/sendmux-getting-started · Skill

  no license33★ repo

  Agent skills for Sendmux