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Scipy statistical testing starter

Skill ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/scipy-statistical-testing-starter

A framework for discovering, compiling, and validating reusable skills for scientific agents.

Install
npx -y skills add ma-compbio-lab/SkillFoundry --skill scipy-statistical-testing-starter

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SKILL.md

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SciPy Statistical Testing Starter

Use this skill to run a small deterministic hypothesis-testing workflow over two toy groups and summarize the results.

What This Skill Does

  • reads a tiny tabular dataset with group and value columns
  • computes per-group means
  • runs Welch's t-test and Mann-Whitney U
  • reports p-values, effect size, and the higher-mean group

When To Use It

  • when you need a starter for statistical-testing
  • when you want a small scipy.stats regression fixture
  • when you need a machine-readable summary for downstream reporting

Run

./slurm/envs/statistics/bin/python skills/statistical-and-machine-learning-foundations-for-science/scipy-statistical-testing-starter/scripts/run_scipy_statistical_testing.py --input skills/statistical-and-machine-learning-foundations-for-science/scipy-statistical-testing-starter/examples/toy_groups.tsv --out scratch/statistics/scipy_statistical_testing_summary.json

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