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Quarto notebook report starter

Skill ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/quarto-notebook-report-starter

A framework for discovering, compiling, and validating reusable skills for scientific agents.

Install
npx -y skills add ma-compbio-lab/SkillFoundry --skill quarto-notebook-report-starter

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.1 KB, 260 tokens by cl100k_base, as published. Nobody here has run it

Quarto Notebook Report Starter

Use this skill to render a small deterministic Jupyter notebook into an HTML report with Quarto.

What it does

  • Copies a tiny example notebook into an isolated temporary workspace.
  • Executes the notebook through Quarto's Jupyter engine.
  • Produces a standalone HTML report.
  • Returns compact JSON confirming that the expected title and executed output are present.

When to use it

  • You need a local starter for notebook-to-report conversion.
  • You want a verified Quarto path that hides the repo-managed conda activation quirks.

Example

python3 skills/visualization-and-reporting/quarto-notebook-report-starter/scripts/render_quarto_notebook_report.py \
  --input skills/visualization-and-reporting/quarto-notebook-report-starter/examples/toy_report.ipynb \
  --html-out scratch/quarto/toy_report.html \
  --summary-out scratch/quarto/toy_report_summary.json

Verification

  • Skill-local tests: python3 -m unittest discover -s skills/visualization-and-reporting/quarto-notebook-report-starter/tests -p 'test_*.py'
  • Repository smoke: python3 -m unittest tests.smoke.test_phase24_frontier_closure_skills -v

Keep looking

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