1,488 of these skill files have been read, by 999 distinct authors, and what they tell an agent counted. What Setup & scaffolding authors agree on, and what they forbid

• 2881

  Parameter configuration conditional logic

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/parameter-configuration-conditional-logic · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2882

  Peak picking parameter configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/peak-picking-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2883

  Plate layout parameter configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/plate-layout-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2884

  Port mapping configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/port-mapping-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2885

  Python environment configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-environment-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2886

  Python environment setup and reproducibility

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-environment-setup-and-reproducibility · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2887

  Python environment setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-environment-setup · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2888

  Python package environment setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-package-environment-setup · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2889

  Quality control metric threshold configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/quality-control-metric-threshold-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2890

  Quantitative mode metabolomics configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/quantitative-mode-metabolomics-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2891

  R package parameter configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-package-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2892

  R parallel backend configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-parallel-backend-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2893

  R script configuration and editing

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-script-configuration-and-editing · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2894

  Repository cloning and setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/repository-cloning-and-setup · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2895

  Repository environment setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/repository-environment-setup · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2896

  Repository source code setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/repository-source-code-setup · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2897

  Saturation threshold configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/saturation-threshold-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2898

  Scaffold extraction from molecular structures

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/scaffold-extraction-from-molecular-structures · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2899

  Search mode configuration optimization

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/search-mode-configuration-optimization · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2900

  Shell environment setup and dependency management

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/shell-environment-setup-and-dependency-management · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2901

  Shiny app configuration deployment

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/shiny-app-configuration-deployment · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2902

  Shiny plot export configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/shiny-plot-export-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2903

  Signal apodization configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/signal-apodization-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2904

  Singularity container backend setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/singularity-container-backend-setup · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2905

  Software dependency management and environment setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/software-dependency-management-and-environment-setup · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2906

  Statistical test configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/statistical-test-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2907

  Structural scaffold feature identification

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/structural-scaffold-feature-identification · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2908

  System configuration documentation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/system-configuration-documentation · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2909

  System environment configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/system-environment-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2910

  System path environment configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/system-path-environment-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2911

  Targeted metabolite screening mode configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/targeted-metabolite-screening-mode-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2912

  Targeted peak integration configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/targeted-peak-integration-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2913

  Toml configuration file generation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/toml-configuration-file-generation · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2914

  Toml configuration file preparation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/toml-configuration-file-preparation · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2915

  Tool parameter configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/tool-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2916

  Version specific deployment configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/version-specific-deployment-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2917

  Vimms controller configuration and execution

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/vimms-controller-configuration-and-execution · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2918

  Virtual environment configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/virtual-environment-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2919

  Virtual mass spectrometer configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/virtual-mass-spectrometer-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2920

  Webassembly local loading setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/webassembly-local-loading-setup · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2921

  Wine windows runtime configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/wine-windows-runtime-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2922

  Workflow configuration and parameterization

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-configuration-and-parameterization · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2923

  Workflow configuration parsing

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-configuration-parsing · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2924

  Workflow routing configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-routing-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2925

  Xml schema configuration for bioinformatics tools

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/xml-schema-configuration-for-bioinformatics-tools · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2926

  Yaml configuration handling

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/yaml-configuration-handling · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2927

  Hatch environment configuration and activation

  HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/hatch-environment-configuration-and-activation · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2928

  Derivatizing matrix configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ce-ms/skills/derivatizing-matrix-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2929

  Metabolomics peak detection configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ce-ms/skills/metabolomics-peak-detection-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2930

  Msconvert tool configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ce-ms/skills/msconvert-tool-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2931

  Peak picking parameter configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ce-ms/skills/peak-picking-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2932

  Mz retention time tolerance parameter configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/direct-infusion/skills/mz-retention-time-tolerance-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2933

  Modulation parameter configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/modulation-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2934

  Mz retention time tolerance parameter configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/mz-retention-time-tolerance-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2935

  Plate layout parameter configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/plate-layout-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2936

  Workflow routing configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/workflow-routing-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2937

  Command line interface configuration and automation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/command-line-interface-configuration-and-automation · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2938

  Command line tool invocation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/command-line-tool-invocation · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2939

  Msi preprocessing parameter configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/msi-preprocessing-parameter-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 2940

  Saturation threshold configuration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/saturation-threshold-configuration · Skill

  14★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder