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Fipy diffusion pde starter

Skill ma-compbio-lab/SkillFoundry/skills/scientific-computing-and-numerical-methods/fipy-diffusion-pde-starter

A framework for discovering, compiling, and validating reusable skills for scientific agents.

Install
npx -y skills add ma-compbio-lab/SkillFoundry --skill fipy-diffusion-pde-starter

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.1 KB, 266 tokens by cl100k_base, as published. Nobody here has run it

FiPy Diffusion PDE Starter

Use this skill to solve a tiny 1D diffusion problem with FiPy and summarize the evolution of the profile.

What it does

  • Builds a small 1D mesh with an initially occupied left boundary slab.
  • Solves a transient diffusion equation for a few deterministic time steps.
  • Reports mass conservation, center-cell value, and the leading edge of the diffused profile in JSON.

When to use it

  • You need a runnable starter for PDE discretization and solvers.
  • You want a verified local PDE example before moving to heavier finite-element toolchains.

Example

slurm/envs/numerics/bin/python skills/scientific-computing-and-numerical-methods/fipy-diffusion-pde-starter/scripts/run_fipy_diffusion_pde.py \
  --out scratch/numerics/fipy_diffusion_summary.json

Verification

  • Skill-local tests: python3 -m unittest discover -s skills/scientific-computing-and-numerical-methods/fipy-diffusion-pde-starter/tests -p 'test_*.py'
  • Repository smoke: python3 -m unittest tests.smoke.test_phase31_frontier_leaf_conversion_skills -v

Keep looking

Skills are one crate of 328,083. Ordering is by how many stacks a row turns up in, so the top of any crate is what has actually been picked rather than what has the most stars.