agentsclimarketplace

Uniprot sequence feature annotation starter

Skill ma-compbio-lab/SkillFoundry/skills/proteomics/uniprot-sequence-feature-annotation-starter

A framework for discovering, compiling, and validating reusable skills for scientific agents.

Install
npx -y skills add ma-compbio-lab/SkillFoundry --skill uniprot-sequence-feature-annotation-starter

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.2 KB, 274 tokens by cl100k_base, as published. Nobody here has run it

UniProt Sequence Feature Annotation Starter

Use this skill to fetch a UniProtKB accession from the official UniProt REST API and summarize its sequence features into compact JSON.

What it does

  • Calls https://rest.uniprot.org/uniprotkb/{accession}.json.
  • Extracts accession, entry ID, protein name, gene names, organism metadata, sequence length, and annotation score.
  • Collapses large feature payloads into stable type counts plus a small set of representative sequence features.

When to use it

  • You need a lightweight starter for protein sequence-feature annotation.
  • You want a deterministic UniProt-backed summary for downstream proteomics or protein biology workflows.

Example

python3 skills/proteomics/uniprot-sequence-feature-annotation-starter/scripts/fetch_uniprot_sequence_feature_summary.py \
  --accession P04637 \
  --out scratch/uniprot/p04637_sequence_features.json

Verification

  • Skill-local tests: python3 -m unittest discover -s skills/proteomics/uniprot-sequence-feature-annotation-starter/tests -p 'test_*.py'
  • Canonical example: python3 skills/proteomics/uniprot-sequence-feature-annotation-starter/scripts/fetch_uniprot_sequence_feature_summary.py --accession P04637

Keep looking

Skills are one crate of 328,083. Ordering is by how many stacks a row turns up in, so the top of any crate is what has actually been picked rather than what has the most stars.