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Nibabel nifti summary starter

Skill ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/nibabel-nifti-summary-starter

A framework for discovering, compiling, and validating reusable skills for scientific agents.From the repository description

Install
npx -y skills add ma-compbio-lab/SkillFoundry --skill nibabel-nifti-summary-starter

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.1 KB, 288 tokens by cl100k_base, as published. Nobody here has run it

NiBabel NIfTI Summary Starter

Use this skill to generate or load a small NIfTI image with nibabel and summarize the core shape, affine, zoom, and unit metadata.

What it does

  • Builds a deterministic toy 4D neuroimaging volume when no input file is supplied.
  • Saves the image to disk when requested and reloads it through nibabel.
  • Reports shape, voxel sizes, affine determinant, basic intensity statistics, and header units.

When to use it

  • You need a runnable starter for Neuroimaging I/O and formats.
  • You want a verified example of NIfTI creation and inspection before moving to larger neuroimaging pipelines.

Example

slurm/envs/neuro/bin/python skills/neuroscience-and-neuroimaging/nibabel-nifti-summary-starter/scripts/run_nibabel_nifti_summary.py \
  --nifti-out scratch/neuro/toy_bold.nii.gz \
  --out scratch/neuro/toy_bold_summary.json

Verification

  • Skill-local tests: python3 -m unittest discover -s skills/neuroscience-and-neuroimaging/nibabel-nifti-summary-starter/tests -p 'test_*.py'
  • Repository smoke: python3 -m unittest tests.smoke.test_phase30_empty_domain_seed_skills -v

What ships with it: 7 files

6.7 KB alongside SKILL.md, 2 of them executable

assets/

examples/

scripts/

tests/

Keep looking

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