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Metabolights study search

Skill ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/metabolights-study-search

Use this skill to search MetaboLights studies and resolve a compact summary for each matched accession through the official JSON API.From its SKILL.md

Install
npx -y skills add ma-compbio-lab/SkillFoundry --skill metabolights-study-search

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.0 KB, 177 tokens by cl100k_base, as published. Nobody here has run it

Purpose

Search public metabolomics studies through the official MetaboLights API and summarize matched study metadata.

When to use

  • You need a lightweight metabolomics dataset-discovery starter.
  • You want study accessions, titles, factors, and release metadata without manually browsing the portal.

When not to use

  • You need full ISA parsing for every assay, source, and sample table.
  • You need raw metabolomics files or downstream analysis workflows.

Inputs

  • A free-text study query such as diabetes.
  • Small page and row limits.

Outputs

  • A JSON summary with study accessions and compact metadata.

Requirements

  • Network access to ebi.ac.uk
  • Python standard library only

Provenance

What ships with it: 7 files

13.5 KB alongside SKILL.md, 2 of them executable

assets/

examples/

scripts/

tests/

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