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Encode experiment search

Skill ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/encode-experiment-search

Use this skill to search ENCODE experiments by assay or free-text keyword and return compact metadata summaries for public epigenomics records.From its SKILL.md

Install
npx -y skills add ma-compbio-lab/SkillFoundry --skill encode-experiment-search

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

0.9 KB, 169 tokens by cl100k_base, as published. Nobody here has run it

Purpose

Search the official ENCODE portal for public experiment metadata and summarize a small result set.

When to use

  • You need a quick ENCODE metadata search starter.
  • You want public assay, biosample, and accession metadata for epigenomics planning or triage.

When not to use

  • You need raw file downloads or workflow execution.
  • You need full ENCODE schema coverage instead of a compact summary.

Inputs

  • A free-text search term such as ATAC-seq.
  • A small result limit.

Outputs

  • A JSON summary with ENCODE experiment accessions and key metadata fields.

Requirements

  • Network access to encodeproject.org
  • Python standard library only

Provenance

What ships with it: 7 files

8.6 KB alongside SKILL.md, 2 of them executable

assets/

examples/

scripts/

tests/

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