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Gbif dataset search starter

Skill ma-compbio-lab/SkillFoundry/skills/ecology-evolution-and-biodiversity/gbif-dataset-search-starter

A framework for discovering, compiling, and validating reusable skills for scientific agents.From the repository description

Install
npx -y skills add ma-compbio-lab/SkillFoundry --skill gbif-dataset-search-starter

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.1 KB, 245 tokens by cl100k_base, as published. Nobody here has run it

GBIF Dataset Search Starter

Use this skill to query the official GBIF dataset-search API and summarize a small biodiversity dataset result set.

What it does

  • Searches GBIF dataset metadata with a free-text query.
  • Returns compact dataset summaries including dataset keys, titles, DOI, license, and publishing country.
  • Supports canonical-asset fallback for the main smoke query when the live API is transiently unavailable.

When to use it

  • You need a runnable starter for Biodiversity dataset discovery.
  • You want a lightweight biodiversity-metadata search step before downstream occurrence or phylogenetics workflows.

Example

python3 skills/ecology-evolution-and-biodiversity/gbif-dataset-search-starter/scripts/run_gbif_dataset_search.py \
  --query puma \
  --out scratch/gbif-datasets/puma_datasets.json

Verification

  • Skill-local tests: python3 -m unittest discover -s skills/ecology-evolution-and-biodiversity/gbif-dataset-search-starter/tests -p 'test_*.py'
  • Repository smoke: python3 -m unittest tests.smoke.test_phase31_frontier_leaf_conversion_skills -v

What ships with it: 7 files

8.4 KB alongside SKILL.md, 2 of them executable

assets/

examples/

scripts/

tests/

Keep looking

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