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Pnas figures

Skill brycewang-stanford/Awesome-Journal-Skills/PNAS-Skills/skills/pnas-figures

Use to finalize PNAS display items — column-width sizing (~9 / 11.4 / 18 cm), minimum font sizes, show-the-data with n and defined error bars, scale bars, colorblind-safe palettes, legend structure, image integrity, and color-mode notes. Enforces figure rigor before submission.From its SKILL.md

Install
npx -y skills add brycewang-stanford/Awesome-Journal-Skills --skill pnas-figures

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SKILL.md

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Display Items (pnas-figures)

When to trigger

  • Figures and tables push the page/item allowance (pnas-writing).
  • Fonts are unreadable at print size, or colors are not colorblind-safe.
  • Bar charts hide the underlying data (no points, no n).
  • Panels are screenshots of software output pasted into the figure.
  • You are unsure which column width to design to.

Sizing for PNAS columns

PNAS is a multi-column journal; design each figure to render at a standard print width without rescaling text:

  • 1 column9 cm wide
  • 1.5 column11.4 cm wide
  • 2 columns (full width)18 cm wide

Confirm exact widths in current PNAS author/digital-art guidelines.

  • Minimum font in the final figure: ~6–8 pt (sans-serif, e.g., Helvetica/Arial), legible after reduction to print size.
  • Line weights ≥ ~0.5 pt; avoid hairlines that vanish in print.
  • Submit at the required resolution (line art high-dpi; halftones/photos at the specified dpi) — confirm specs.

Show the data, not just the summary

  • Replace bar-of-means with dot plots / box+points / violins+points wherever n is small.
  • Always state n in the legend, and what n is (cells? animals? subjects? independent experiments?).
  • Error bars must be defined in the legend (SD vs SEM vs 95% CI) — never undefined.
  • For images (blots, micrographs): include scale bars, and keep full, uncropped key blots for SI Appendix.

Color and accessibility

  • Use a colorblind-safe palette (avoid red/green as the only contrast).
  • Don't encode meaning by color alone — add shape/pattern/labels.
  • Color mode: prepare figures in RGB for online; PNAS prints in color and may request or convert to CMYK for print — confirm the current color-figure policy and any charges. Check that figures remain interpretable in grayscale.
  • No rainbow/jet colormaps for continuous data — use perceptually uniform maps (viridis, etc.).

Figure legend structure

Each legend: a short title sentence (the claim of the figure), then per-panel descriptions (A, B, C…), then statistics (test, n, error-bar definition, exact P or values). The legend should let the figure stand alone.

Integrity rules (non-negotiable)

  • No selective deletion, splicing, or beautification of gels/blots/images without a labeled boundary; disclose any grouping.
  • Quantitative comparisons must come from the same experiment/exposure.
  • Keep unprocessed source images and source data — PNAS may request them (pnas-data).

Multi-panel discipline

  • Keep panels purposeful; if a figure sprawls, split it or move panels to SI Appendix.
  • Consistent axis scales across comparable panels.
  • One message per figure; the legend title states it.

Output format

【Item count】 figures + tables vs page/item allowance (confirm guidelines) → ok / over
【Sizing】 designed at 9 / 11.4 / 18 cm? fonts ≥ ~6–8 pt? yes/no
【Data shown】 points + n + defined error bars? yes/no
【Color】 colorblind-safe? RGB online / CMYK-print aware? grayscale-readable? yes/no
【Integrity】 scale bars / uncropped blots in SI / source data kept? yes/no
【Fixes】 [...]
【Next】 pnas-statistics

Anti-patterns

  • Do not paste raw Stata/Prism/ImageJ screenshots as figures.
  • Do not use bars to hide n=3 with huge spread — show the points.
  • Do not leave error bars undefined or mix SD and SEM across panels.
  • Do not rely on red-vs-green as the sole encoding.
  • Do not assume color print is free — confirm the color policy.

What ships with it

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Just SKILL.md. No reference files, no scripts.

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