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En agrienv journal workflow

Skill brycewang-stanford/Awesome-Journal-Skills/Agriculture-Environment-Journal-Skills/skills/en-agrienv-journal-workflow

Use when deciding which English agriculture / environment / earth-science journal skill to invoke next, comparing fit across the 30-journal agriculture-and-environment roadmap, or routing a manuscript before venue-specific re-framing. Routes by sub-field (agronomy / plant / soil / food / environment / earth / climate), contribution type, and evidence shape (field trial / lab assay / observational survey / model / dataset).From its SKILL.md

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npx -y skills add brycewang-stanford/Awesome-Journal-Skills --skill en-agrienv-journal-workflow

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SKILL.md

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Agriculture & environment journal workflow (en-agrienv-journal-workflow)

Purpose

This is the routing skill for the agriculture-and-environment bundle. It does not replace a single-journal profile; it first classifies the manuscript by sub-field, contribution type, and evidence shape, then routes into the matching per-journal skill for fit and re-framing. It is a sibling to en-natsci-journal-workflow (natural science) and en-engtech-journal-workflow (engineering).

Ask four things first

  1. Sub-field: crop/agronomy, plant biology, soil science, food science, ecosystem/environmental science, pollution/health, climate/atmosphere, hydrology/water, ocean/limnology, or solid-earth geoscience?
  2. Contribution type: a mechanism, a field/management result, a synthesis/review, a model or projection, a new dataset/data product, or a methods/measurement advance?
  3. Evidence shape: controlled field trial, glasshouse/lab assay, observational or monitoring survey, remote sensing, long-term record, process/earth-system model, or a documented public dataset?
  4. Audience breadth: broad significance (a Nature Portfolio title), a whole sub-field (a society flagship), or a specialist community?

Pre-routing evidence gates

Before naming a journal, classify the manuscript through these gates. A weak gate does not always mean "do not submit"; it usually means route down to a specialist venue, reframe the claim, or fix the evidence before testing a higher-prestige venue.

GatePass signalIf weak
ContributionA mechanism, management implication, method, projection, or dataset that transfers beyond the study siteReframe as a local case study, technical note, or specialist-field result
Evidence strengthReplicated sites/seasons/systems, transparent uncertainty, and controls matched to the claimDo not route to broad Nature/society flagships; strengthen replication first
Scale matchClaim scale matches the evidence scale: plot, field, landscape, regional, global, or datasetNarrow the title/abstract and select a venue that accepts the actual scale
Data/code readinessData, code, model configuration, and metadata can be deposited or shared under field normsTreat deposition as a blocker for ESSD, earth-system, hydrology, and reuse claims
CompliancePermits, ethics, biosafety, field-site permissions, and competing-interest disclosures are knownPause final routing until the single-journal checklist can verify requirements

Evidence-shape escalation

  • Single site-year field trial: usually specialist agronomy/crop venue; do not pitch as general food-security evidence without multi-site or mechanistic support.
  • Multi-site or multi-season field trial: can support field flagship routing if management implications and uncertainty are explicit.
  • Lab/glasshouse mechanism: plant or soil mechanism venues; needs field or ecological validation before claiming landscape or management impact.
  • Remote sensing / monitoring survey: route by validation and generalizability; benchmark against independent observations and document processing code.
  • Process or earth-system model: route by the model contribution, sensitivity analysis, and reproducibility package, not only by the application region.
  • Dataset/data product: earth-system-science-data only when the dataset itself is the product, has persistent identifiers, rich metadata, and a public archive.

Quick routing

Manuscript signaturePrefer skill
Food-systems advance with broad significancenature-food
Plant-science advance, broad and high-impactnature-plants
Fundamental plant biology / physiology / ecologynew-phytologist / the-plant-journal
Authoritative plant-biology reviewannual-review-of-plant-biology
Crop yield, agronomy, cropping-system field researchfield-crops-research / agronomy-for-sustainable-development
Agroecosystem nutrient/GHG/biodiversity at field-to-landscape scaleagriculture-ecosystems-and-environment
Soil biology, biogeochemistry, soil carbon/microbiomesoil-biology-and-biochemistry
Food chemistry / composition / safetyfood-chemistry
Food-technology trends and synthesistrends-in-food-science-and-technology
Climate-change impacts on ecosystems/biotaglobal-change-biology
Human-exposure environmental healthenvironment-international / environmental-health-perspectives
Sustainability, circular economy, cleaner productionjournal-of-cleaner-production / resources-conservation-and-recycling
Authoritative environment & resources reviewannual-review-of-environment-and-resources
Environmental contamination / ecotoxicologyenvironmental-pollution
Broad earth/environment advance, OAcommunications-earth-and-environment
Climate dynamics / variabilityjournal-of-climate
New, documented public datasetearth-system-science-data
Catchment / surface / groundwater hydrologyjournal-of-hydrology / water-resources-research
Solid-earth, geochemistry, planetary-scale processesearth-and-planetary-science-letters / geology
Carbon/nutrient cycling, biogeochemistryglobal-biogeochemical-cycles
Land–atmosphere flux / agro-meteorologyagricultural-and-forest-meteorology
Forest ecology and managementforest-ecology-and-management
Aquatic / freshwater / ocean ecology and limnologylimnology-and-oceanography
Meteorological-society review / community articlebulletin-of-the-american-meteorological-society

Sibling-journal disambiguation

Confusable targetsDecision rule
nature-food vs field-crops-researchNature Food wants food-systems significance and transdisciplinary reach; FCR wants a rigorous crop/agronomy field result.
new-phytologist vs the-plant-journalNew Phytologist favors plant ecology/physiology/interactions breadth; The Plant Journal favors molecular/cellular plant biology with mechanism. Re-check current scopes.
journal-of-hydrology vs water-resources-researchWRR (AGU) favors fundamental water-science methodology/theory; Journal of Hydrology spans process, observational, and applied hydrology more broadly.
agriculture-ecosystems-and-environment vs soil-biology-and-biochemistryAEE emphasizes field-to-landscape agroecosystem outcomes; SBB emphasizes soil-process mechanism and soil biota.
global-change-biology vs agriculture-ecosystems-and-environmentGCB needs a global-change framing and biological response; AEE needs an agroecosystem-management framing.
Nature Portfolio (nature-food/nature-plants/communications-earth-and-environment) vs society flagshipsNature titles need broad significance and framing; a complete sub-field result routes to the society/specialist journal.
earth-system-science-data vs an analysis journalESSD is for the dataset itself (documented, publicly deposited with a DOI); the scientific analysis of that data belongs in an analysis journal.
environment-international / environmental-health-perspectives vs pollution journalsHuman-exposure or health-risk inference routes to the health journals; contaminant behavior, remediation, or ecotoxicology routes to the pollution/environmental-process venues.
journal-of-climate vs agricultural-and-forest-meteorologyClimate dynamics and variability route to Journal of Climate; land-atmosphere fluxes, crop/forest microclimate, and agro-meteorological applications route to AFM.
global-biogeochemical-cycles vs global-change-biologyElement cycles, fluxes, and earth-system budgets route to GBC; organismal, ecosystem, or biological responses to global change route to GCB.
resources-conservation-and-recycling vs journal-of-cleaner-productionCircular-material-flow and recycling systems route to RCR; cleaner production, industrial sustainability, and management interventions route to JCP.

Decision rules

  • Name the advance, not the site. "We measured X at our site" is not a contribution unless it yields a generalizable mechanism, management result, projection, or dataset.
  • Field evidence discipline. Field/observational claims need adequate replication, controls, and uncertainty; a single site-year or unreplicated trial is a common reject at the agronomy and ecology venues.
  • Data deposition is a gate, not a nicety. Earth-science and environmental venues increasingly mandate FAIR data/code deposition; data journals (ESSD) require the public dataset itself. Sort this before submission.
  • Review vs. primary. Annual Review titles and the synthesis-leaning venues are largely invited/scoped — do not route an unsolicited primary-data paper there without checking scope.
  • Scale and framing. Plot/lab, field, landscape, regional, and global results route to different venues; match the claim's scale to the journal's audience.
  • Health, policy, and management claims need the right endpoint. Do not route a contaminant-detection paper as environmental health unless exposure/outcome inference is actually measured; do not route a sustainability paper as policy unless a decision, intervention, or system boundary is specified.
  • Always enter the single-journal skill's official-submission checklist before submitting; never rely on a stale template.

Handoff protocol

After routing, hand off only the minimum needed context to the single-journal skill:

  • the strongest claim the evidence can honestly support;
  • the rejected broader claim, if any, and why it was narrowed;
  • the evidence shape and weakest gate from the table above;
  • the one official requirement most likely to block submission;
  • the alternative venue to keep warm if the first-choice fit fails.

Output format

[Top journal skill] <skill-name>
[Alt 1] <skill-name> (reason)
[Alt 2] <skill-name> (reason)
[Do not submit to] <journal> (one-line mismatch reason)
[Evidence gates] contribution / evidence-strength / scale / deposition / compliance: pass|watch|block
[Biggest current gap] significance / field-evidence / replication / data-deposition / scale-framing / official requirements
[Claim to narrow] <claim, or none>
[Next step] invoke <skill-name> for single-venue fit and re-framing

What ships with it

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Just SKILL.md. No reference files, no scripts.

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