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The catalog

325,949 rows, by stacks then stars

  • Geo connector

    ammawla/encode-toolkit/plugin/skills/geo-connector Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Gnomad variants

    ammawla/encode-toolkit/plugin/skills/gnomad-variants Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Gtex expression

    ammawla/encode-toolkit/plugin/skills/gtex-expression Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Gwas catalog

    ammawla/encode-toolkit/plugin/skills/gwas-catalog Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Hic aggregation

    ammawla/encode-toolkit/plugin/skills/hic-aggregation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Histone aggregation

    ammawla/encode-toolkit/plugin/skills/histone-aggregation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Integrative analysis

    ammawla/encode-toolkit/plugin/skills/integrative-analysis Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Jaspar motifs

    ammawla/encode-toolkit/plugin/skills/jaspar-motifs Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Liftover coordinates

    ammawla/encode-toolkit/plugin/skills/liftover-coordinates Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Methylation aggregation

    ammawla/encode-toolkit/plugin/skills/methylation-aggregation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Motif analysis

    ammawla/encode-toolkit/plugin/skills/motif-analysis Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Multi omics integration

    ammawla/encode-toolkit/plugin/skills/multi-omics-integration Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Peak annotation

    ammawla/encode-toolkit/plugin/skills/peak-annotation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Pipeline atacseq

    ammawla/encode-toolkit/plugin/skills/pipeline-atacseq Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Pipeline chipseq

    ammawla/encode-toolkit/plugin/skills/pipeline-chipseq Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Pipeline cutandrun

    ammawla/encode-toolkit/plugin/skills/pipeline-cutandrun Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Pipeline dnaseseq

    ammawla/encode-toolkit/plugin/skills/pipeline-dnaseseq Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Pipeline guide

    ammawla/encode-toolkit/plugin/skills/pipeline-guide Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Pipeline hic

    ammawla/encode-toolkit/plugin/skills/pipeline-hic Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Pipeline rnaseq

    ammawla/encode-toolkit/plugin/skills/pipeline-rnaseq Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Pipeline wgbs

    ammawla/encode-toolkit/plugin/skills/pipeline-wgbs Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Publication trust

    ammawla/encode-toolkit/plugin/skills/publication-trust Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Quality assessment

    ammawla/encode-toolkit/plugin/skills/quality-assessment Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Regulatory elements

    ammawla/encode-toolkit/plugin/skills/regulatory-elements Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Scientific writing

    ammawla/encode-toolkit/plugin/skills/scientific-writing Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Scrna meta analysis

    ammawla/encode-toolkit/plugin/skills/scrna-meta-analysis Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Search encode

    ammawla/encode-toolkit/plugin/skills/search-encode Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Setup

    ammawla/encode-toolkit/plugin/skills/setup Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Single cell encode

    ammawla/encode-toolkit/plugin/skills/single-cell-encode Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Track experiments

    ammawla/encode-toolkit/plugin/skills/track-experiments Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Ucsc browser

    ammawla/encode-toolkit/plugin/skills/ucsc-browser Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Variant annotation

    ammawla/encode-toolkit/plugin/skills/variant-annotation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Visualization workflow

    ammawla/encode-toolkit/plugin/skills/visualization-workflow Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Accessibility aggregation

    ammawla/encode-toolkit/skills/accessibility-aggregation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Batch analysis

    ammawla/encode-toolkit/skills/batch-analysis Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Bioinformatics installer

    ammawla/encode-toolkit/skills/bioinformatics-installer Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Cellxgene context

    ammawla/encode-toolkit/skills/cellxgene-context Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Cite encode

    ammawla/encode-toolkit/skills/cite-encode Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Clinvar annotation

    ammawla/encode-toolkit/skills/clinvar-annotation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Compare biosamples

    ammawla/encode-toolkit/skills/compare-biosamples Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Cross reference

    ammawla/encode-toolkit/skills/cross-reference Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Data provenance

    ammawla/encode-toolkit/skills/data-provenance Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Disease research

    ammawla/encode-toolkit/skills/disease-research Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Download encode

    ammawla/encode-toolkit/skills/download-encode Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Ensembl annotation

    ammawla/encode-toolkit/skills/ensembl-annotation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Epigenome profiling

    ammawla/encode-toolkit/skills/epigenome-profiling Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Functional screen analysis

    ammawla/encode-toolkit/skills/functional-screen-analysis Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Geo connector

    ammawla/encode-toolkit/skills/geo-connector Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Gnomad variants

    ammawla/encode-toolkit/skills/gnomad-variants Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Gtex expression

    ammawla/encode-toolkit/skills/gtex-expression Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Gwas catalog

    ammawla/encode-toolkit/skills/gwas-catalog Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Hic aggregation

    ammawla/encode-toolkit/skills/hic-aggregation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Histone aggregation

    ammawla/encode-toolkit/skills/histone-aggregation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Integrative analysis

    ammawla/encode-toolkit/skills/integrative-analysis Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Jaspar motifs

    ammawla/encode-toolkit/skills/jaspar-motifs Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Liftover coordinates

    ammawla/encode-toolkit/skills/liftover-coordinates Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Methylation aggregation

    ammawla/encode-toolkit/skills/methylation-aggregation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Motif analysis

    ammawla/encode-toolkit/skills/motif-analysis Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Multi omics integration

    ammawla/encode-toolkit/skills/multi-omics-integration Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

  • Peak annotation

    ammawla/encode-toolkit/skills/peak-annotation Skill

    26★ repo

    MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments