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The catalog

325,949 rows, by stacks then stars

  • Clusterprofiler custom enrichment

    ma-compbio-lab/SkillFoundry/skills/systems-biology/clusterprofiler-custom-enrichment Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Fgsea preranked enrichment

    ma-compbio-lab/SkillFoundry/skills/systems-biology/fgsea-preranked-enrichment Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Networkx graph construction starter

    ma-compbio-lab/SkillFoundry/skills/systems-biology/networkx-graph-construction-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Networkx network propagation starter

    ma-compbio-lab/SkillFoundry/skills/systems-biology/networkx-network-propagation-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Quickgo term search

    ma-compbio-lab/SkillFoundry/skills/systems-biology/quickgo-term-search Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Reactome event summary

    ma-compbio-lab/SkillFoundry/skills/systems-biology/reactome-event-summary Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Reactome identifiers enrichment

    ma-compbio-lab/SkillFoundry/skills/systems-biology/reactome-identifiers-enrichment Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Reactome pathway analysis starter

    ma-compbio-lab/SkillFoundry/skills/systems-biology/reactome-pathway-analysis-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Reactome pathway hierarchy walk starter

    ma-compbio-lab/SkillFoundry/skills/systems-biology/reactome-pathway-hierarchy-walk-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Regulatory network inference starter

    ma-compbio-lab/SkillFoundry/skills/systems-biology/regulatory-network-inference-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • String interaction partners starter

    ma-compbio-lab/SkillFoundry/skills/systems-biology/string-interaction-partners-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Bulk rna seq qc and normalization starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/bulk-rna-seq-qc-and-normalization-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Cellxgene census atlas query starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/cellxgene-census-atlas-query-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Isoform transcript level analysis starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/isoform-transcript-level-analysis-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Perturb seq starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/perturb-seq-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Pseudobulk analysis starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/pseudobulk-analysis-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Pydeseq2 differential expression starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/pydeseq2-differential-expression-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Rna velocity starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/rna-velocity-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Scanpy cell type annotation starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-cell-type-annotation-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Scanpy combat batch correction starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-combat-batch-correction-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Scanpy dpt trajectory starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-dpt-trajectory-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Scanpy qc starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-qc-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Scanpy ranked genes starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-ranked-genes-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Spatial transcriptomics starter

    ma-compbio-lab/SkillFoundry/skills/transcriptomics/spatial-transcriptomics-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Dash scientific dashboard starter

    ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/dash-scientific-dashboard-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Figure recreation from papers starter

    ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/figure-recreation-from-papers-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Matplotlib publication plot starter

    ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/matplotlib-publication-plot-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Mkdocs summary catalog starter

    ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/mkdocs-summary-catalog-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Plotly interactive report starter

    ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/plotly-interactive-report-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Quarto notebook report starter

    ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/quarto-notebook-report-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Skill browser mindmap generation starter

    ma-compbio-lab/SkillFoundry/skills/visualization-and-reporting/skill-browser-mindmap-generation-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/augment/.augment/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/bob/.bob/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/claude/.claude/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/claw/.claw/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/cline/.agents/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/codebuddy/.codebuddy/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/command-code/.commandcode/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/continue/.continue/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/copilot/.copilot/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/cortex/.snowflake/cortex/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/crush/.config/crush/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/cursor/.cursor/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/deepagents/.deepagents/agent/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/firebender/.firebender/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/gemini/.gemini/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/hermes/.hermes/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/iflow/.iflow/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/junie/.junie/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/kilo-code/.kilocode/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/kimi/.config/agents/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/kiro/.kiro/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/kode/.kode/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/mcpjam/.mcpjam/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/mistral-vibe/.vibe/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/mux/.mux/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/neovate/.neovate/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/openclaw/.openclaw/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/opencode/.agents/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.

  • Karpathy guidelines

    swarmclawai/andrej-karpathy-skills/adapters/opencode/.opencode/skills/karpathy-guidelines Skill

    36★ repo

    Karpathy-inspired coding-agent guidelines packaged for Claude Code, Codex, Cursor, Gemini, OpenCode, Aider, Copilot, OpenClaw, and any AGENTS.md or Agent Skills-compatible agent.