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Ship & operate

32,706 rows, by stacks then stars

969 of these skill files have been read, by 779 distinct authors, and what they tell an agent counted. What Ship & operate authors agree on, and what they forbid

  • Workflow orchestration and parallelization

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/workflow-orchestration-and-parallelization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow reconstruction

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/workflow-reconstruction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow routing configuration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/workflow-routing-configuration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Xcms workflow execution

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/xcms-workflow-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Batch effect correction workflow

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/batch-effect-correction-workflow Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Ci cd pipeline orchestration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/ci-cd-pipeline-orchestration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Cli invocation with file path arguments

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/cli-invocation-with-file-path-arguments Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Command line interface configuration and automation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/command-line-interface-configuration-and-automation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Cross validation workflow execution

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/cross-validation-workflow-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Cross workflow format translation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/cross-workflow-format-translation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Deep learning model training with monitoring

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/deep-learning-model-training-with-monitoring Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Deep learning training convergence monitoring

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/deep-learning-training-convergence-monitoring Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Docker container execution

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/docker-container-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • File i o automation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/file-i-o-automation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gnps workflow identification

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/gnps-workflow-identification Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gnps workflow identifier retrieval

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/gnps-workflow-identifier-retrieval Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Gnps workflow result processing

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/gnps-workflow-result-processing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Interactive workflow validation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/interactive-workflow-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Ion image quantification workflow

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/ion-image-quantification-workflow Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Ion target quality monitoring

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/ion-target-quality-monitoring Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Jupyter notebook workflow automation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/jupyter-notebook-workflow-automation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Knime workflow orchestration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/knime-workflow-orchestration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Lcms workflow orchestration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/lcms-workflow-orchestration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Lda convergence monitoring and iteration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/lda-convergence-monitoring-and-iteration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Library integration workflow

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/library-integration-workflow Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Mass spectrometry workflow orchestration snakemake

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/mass-spectrometry-workflow-orchestration-snakemake Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Mass spectrometry workflow orchestration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/mass-spectrometry-workflow-orchestration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Metabolite identity ground truth validation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/metabolite-identity-ground-truth-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Metabolomics functional prediction workflow validation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/metabolomics-functional-prediction-workflow-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Metabolomics tool deployment

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/metabolomics-tool-deployment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Natural products workflow orchestration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/natural-products-workflow-orchestration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Neural network model deployment

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/neural-network-model-deployment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Neural network model inference deployment

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/neural-network-model-inference-deployment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Nextflow workflow execution

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/nextflow-workflow-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Nontargeted analysis workflow execution

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/nontargeted-analysis-workflow-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Python workflow execution and orchestration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/python-workflow-execution-and-orchestration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Python workflow scripting

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/python-workflow-scripting Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • R bioconductor workflow orchestration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/r-bioconductor-workflow-orchestration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • R workflow implementation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/r-workflow-implementation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • R workflow scripting for analytical chemistry

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/r-workflow-scripting-for-analytical-chemistry Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Separation technique workflow alignment

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/separation-technique-workflow-alignment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Singularity container deployment

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/singularity-container-deployment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Spectral library integration workflow

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/spectral-library-integration-workflow Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Spectral workflow validation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/spectral-workflow-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Standalone web application deployment

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/standalone-web-application-deployment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Untargeted metabolomics workflow implementation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/untargeted-metabolomics-workflow-implementation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow architecture documentation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/workflow-architecture-documentation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow branching logic design

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/workflow-branching-logic-design Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow configuration and parameterization

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/workflow-configuration-and-parameterization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow output validation and qa

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/workflow-output-validation-and-qa Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow pipeline execution validation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/workflow-pipeline-execution-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow reconstruction

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/workflow-reconstruction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow reproducibility validation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/workflow-reproducibility-validation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow routing configuration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/workflow-routing-configuration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Xcms output replacement workflow

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/xcms-output-replacement-workflow Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Xcms workflow execution

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/xcms-workflow-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Batch script execution and automation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ms-generic/skills/batch-script-execution-and-automation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Ci cd workflow monitoring

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ms-generic/skills/ci-cd-workflow-monitoring Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Classification workflow parameter toggling

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ms-generic/skills/classification-workflow-parameter-toggling Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Conditional dispatch workflow implementation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ms-generic/skills/conditional-dispatch-workflow-implementation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder