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Setup & scaffolding

5,913 rows, by stacks then stars

1,967 of these skill files have been read, by 1,553 distinct authors, and what they tell an agent counted. What Setup & scaffolding authors agree on, and what they forbid

  • Motif analysis starter

    ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/motif-analysis-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Multiome integration starter

    ma-compbio-lab/SkillFoundry/skills/epigenomics-and-chromatin/multiome-integration-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Bcftools variant filtering starter

    ma-compbio-lab/SkillFoundry/skills/genomics/bcftools-variant-filtering-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Comparative genomics starter

    ma-compbio-lab/SkillFoundry/skills/genomics/comparative-genomics-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Fastqc multiqc read qc starter

    ma-compbio-lab/SkillFoundry/skills/genomics/fastqc-multiqc-read-qc-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Fine mapping starter

    ma-compbio-lab/SkillFoundry/skills/genomics/fine-mapping-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Germline pipelines starter

    ma-compbio-lab/SkillFoundry/skills/genomics/germline-pipelines-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Gwas starter

    ma-compbio-lab/SkillFoundry/skills/genomics/gwas-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Long read genomics starter

    ma-compbio-lab/SkillFoundry/skills/genomics/long-read-genomics-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Minimap2 read mapping starter

    ma-compbio-lab/SkillFoundry/skills/genomics/minimap2-read-mapping-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Phylogenomics starter

    ma-compbio-lab/SkillFoundry/skills/genomics/phylogenomics-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Polygenic risk scoring starter

    ma-compbio-lab/SkillFoundry/skills/genomics/polygenic-risk-scoring-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Pysam sam bam summary starter

    ma-compbio-lab/SkillFoundry/skills/genomics/pysam-sam-bam-summary-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Quantification starter

    ma-compbio-lab/SkillFoundry/skills/genomics/quantification-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Somatic pipelines starter

    ma-compbio-lab/SkillFoundry/skills/genomics/somatic-pipelines-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Sourmash signature compare starter

    ma-compbio-lab/SkillFoundry/skills/genomics/sourmash-signature-compare-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Variant calling starter

    ma-compbio-lab/SkillFoundry/skills/genomics/variant-calling-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Cluster safe installs starter

    ma-compbio-lab/SkillFoundry/skills/hpc/cluster-safe-installs-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Cpu memory tuning starter

    ma-compbio-lab/SkillFoundry/skills/hpc/cpu-memory-tuning-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Gpu jobs starter

    ma-compbio-lab/SkillFoundry/skills/hpc/gpu-jobs-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • I o aware workflows starter

    ma-compbio-lab/SkillFoundry/skills/hpc/i-o-aware-workflows-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Interactive debug workflows starter

    ma-compbio-lab/SkillFoundry/skills/hpc/interactive-debug-workflows-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Multi node jobs starter

    ma-compbio-lab/SkillFoundry/skills/hpc/multi-node-jobs-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Scratch space usage starter

    ma-compbio-lab/SkillFoundry/skills/hpc/scratch-space-usage-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Slurm job array starter

    ma-compbio-lab/SkillFoundry/skills/hpc/slurm-job-array-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Slurm monitoring accounting starter

    ma-compbio-lab/SkillFoundry/skills/hpc/slurm-monitoring-accounting-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Cell tracking starter

    ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/cell-tracking-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Microscopy pipelines starter

    ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/microscopy-pipelines-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Multi modal image omics integration starter

    ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/multi-modal-image-omics-integration-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Pathology histology workflows starter

    ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/pathology-histology-workflows-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Representation learning for scientific images starter

    ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/representation-learning-for-scientific-images-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Skimage otsu segmentation starter

    ma-compbio-lab/SkillFoundry/skills/imaging-and-phenotype-analysis/skimage-otsu-segmentation-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Generative design for materials starter

    ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/generative-design-for-materials-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Laboratory to simulation data linkage starter

    ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/laboratory-to-simulation-data-linkage-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Materials benchmark datasets starter

    ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/materials-benchmark-datasets-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Matminer property regression starter

    ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/matminer-property-regression-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Matminer toy property prediction starter

    ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/matminer-toy-property-prediction-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Phase stability analysis starter

    ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/phase-stability-analysis-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Pymatgen crystal structure parsing starter

    ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/pymatgen-crystal-structure-parsing-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Surrogate models for simulation starter

    ma-compbio-lab/SkillFoundry/skills/materials-science-and-engineering/surrogate-models-for-simulation-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Datasketch resource deduplication starter

    ma-compbio-lab/SkillFoundry/skills/meta-maintenance/datasketch-resource-deduplication-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Deprecation migration starter

    ma-compbio-lab/SkillFoundry/skills/meta-maintenance/deprecation-migration-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Documentation quality improvement starter

    ma-compbio-lab/SkillFoundry/skills/meta-maintenance/documentation-quality-improvement-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Freshness audits starter

    ma-compbio-lab/SkillFoundry/skills/meta-maintenance/freshness-audits-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Precommit regression testing starter

    ma-compbio-lab/SkillFoundry/skills/meta-maintenance/precommit-regression-testing-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Rapidfuzz skill deduplication starter

    ma-compbio-lab/SkillFoundry/skills/meta-maintenance/rapidfuzz-skill-deduplication-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Registry link audit starter

    ma-compbio-lab/SkillFoundry/skills/meta-maintenance/registry-link-audit-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Taxonomy refinement starter

    ma-compbio-lab/SkillFoundry/skills/meta-maintenance/taxonomy-refinement-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Differential metabolomics starter

    ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/differential-metabolomics-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Feature annotation starter

    ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/feature-annotation-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Lipidomics starter

    ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/lipidomics-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Metabolomics preprocessing starter

    ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/metabolomics-preprocessing-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Microbiome analysis starter

    ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/microbiome-analysis-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Multi omics integration starter

    ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/multi-omics-integration-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Brain atlas integration starter

    ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/brain-atlas-integration-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Computational psychiatry and clinical neuroinformatics starter

    ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/computational-psychiatry-and-clinical-neuroinformatics-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Mne connectivity graph starter

    ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/mne-connectivity-graph-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Mne eeg preprocessing starter

    ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/mne-eeg-preprocessing-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Multimodal neuroimaging fusion starter

    ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/multimodal-neuroimaging-fusion-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.

  • Neural decoding and encoding models starter

    ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/neural-decoding-and-encoding-models-starter Skill

    36★ repo

    A framework for discovering, compiling, and validating reusable skills for scientific agents.