Skill registry router starter

ma-compbio-lab/SkillFoundry/skills/scientific-agents-and-automation/skill-registry-router-starter · Skill

Tool using analysis agents starter

ma-compbio-lab/SkillFoundry/skills/scientific-agents-and-automation/tool-using-analysis-agents-starter · Skill

Workflow generation agents starter

ma-compbio-lab/SkillFoundry/skills/scientific-agents-and-automation/workflow-generation-agents-starter · Skill

Automatic differentiation for scientific models starter

ma-compbio-lab/SkillFoundry/skills/scientific-computing-and-numerical-methods/automatic-differentiation-for-scientific-models-starter · Skill

Chaospy uncertainty propagation starter

ma-compbio-lab/SkillFoundry/skills/scientific-computing-and-numerical-methods/chaospy-uncertainty-propagation-starter · Skill

Differentiable programming for simulators starter

ma-compbio-lab/SkillFoundry/skills/scientific-computing-and-numerical-methods/differentiable-programming-for-simulators-starter · Skill

Fipy diffusion pde starter

ma-compbio-lab/SkillFoundry/skills/scientific-computing-and-numerical-methods/fipy-diffusion-pde-starter · Skill

Inverse problems and data assimilation starter

ma-compbio-lab/SkillFoundry/skills/scientific-computing-and-numerical-methods/inverse-problems-and-data-assimilation-starter · Skill

Numerical benchmarking and verification starter

ma-compbio-lab/SkillFoundry/skills/scientific-computing-and-numerical-methods/numerical-benchmarking-and-verification-starter · Skill

Scipy ode simulation starter

ma-compbio-lab/SkillFoundry/skills/scientific-computing-and-numerical-methods/scipy-ode-simulation-starter · Skill

Sparse iterative linear algebra starter

ma-compbio-lab/SkillFoundry/skills/scientific-computing-and-numerical-methods/sparse-iterative-linear-algebra-starter · Skill

Benchmark table mining starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/benchmark-table-mining-starter · Skill

Claim assumption limitation extraction starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/claim-assumption-limitation-extraction-starter · Skill

Dataset code link extraction starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/dataset-code-link-extraction-starter · Skill

Figure table caption extraction starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/figure-table-caption-extraction-starter · Skill

Openalex citation chain starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/openalex-citation-chain-starter · Skill

Protocol and workflow extraction starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/protocol-and-workflow-extraction-starter · Skill

Reproducibility cue extraction starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/reproducibility-cue-extraction-starter · Skill

Scientific summarization starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/scientific-summarization-starter · Skill

Semantic scholar paper triage starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/semantic-scholar-paper-triage-starter · Skill

Semantic scholar review paper mining starter

ma-compbio-lab/SkillFoundry/skills/scientific-knowledge/semantic-scholar-review-paper-mining-starter · Skill

Active learning starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/active-learning-starter · Skill

Arviz posterior diagnostics starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/arviz-posterior-diagnostics-starter · Skill

Clustering starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/clustering-starter · Skill

Dowhy average treatment effect starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/dowhy-average-treatment-effect-starter · Skill

Foundation models for biology chemistry science starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/foundation-models-for-biology-chemistry-science-starter · Skill

Multimodal fusion starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/multimodal-fusion-starter · Skill

Optuna bayesian optimization starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/optuna-bayesian-optimization-starter · Skill

Pydoe3 experimental design starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/pydoe3-experimental-design-starter · Skill

Pymc bayesian linear regression starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/pymc-bayesian-linear-regression-starter · Skill

Representation learning starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/representation-learning-starter · Skill

Scipy statistical testing starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/scipy-statistical-testing-starter · Skill

Simulation based inference starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/simulation-based-inference-starter · Skill

Umap dimensionality reduction starter

ma-compbio-lab/SkillFoundry/skills/statistical-and-machine-learning-foundations-for-science/umap-dimensionality-reduction-starter · Skill

Binding site analysis starter

ma-compbio-lab/SkillFoundry/skills/structural-biology/binding-site-analysis-starter · Skill

Fold comparison starter

ma-compbio-lab/SkillFoundry/skills/structural-biology/fold-comparison-starter · Skill

Protein complex metadata starter

ma-compbio-lab/SkillFoundry/skills/structural-biology/protein-complex-metadata-starter · Skill

Sequence structure alignment starter

ma-compbio-lab/SkillFoundry/skills/structural-biology/sequence-structure-alignment-starter · Skill

Structure parsing and cleanup starter

ma-compbio-lab/SkillFoundry/skills/structural-biology/structure-parsing-and-cleanup-starter · Skill

Structure to sequence cross linking starter

ma-compbio-lab/SkillFoundry/skills/structural-biology/structure-to-sequence-cross-linking-starter · Skill

Visualization starter

ma-compbio-lab/SkillFoundry/skills/structural-biology/visualization-starter · Skill

Causal network analysis starter

ma-compbio-lab/SkillFoundry/skills/systems-biology/causal-network-analysis-starter · Skill

Networkx graph construction starter

ma-compbio-lab/SkillFoundry/skills/systems-biology/networkx-graph-construction-starter · Skill

Networkx network propagation starter

ma-compbio-lab/SkillFoundry/skills/systems-biology/networkx-network-propagation-starter · Skill

Reactome pathway analysis starter

ma-compbio-lab/SkillFoundry/skills/systems-biology/reactome-pathway-analysis-starter · Skill

Reactome pathway hierarchy walk starter

ma-compbio-lab/SkillFoundry/skills/systems-biology/reactome-pathway-hierarchy-walk-starter · Skill

Regulatory network inference starter

ma-compbio-lab/SkillFoundry/skills/systems-biology/regulatory-network-inference-starter · Skill

String interaction partners starter

ma-compbio-lab/SkillFoundry/skills/systems-biology/string-interaction-partners-starter · Skill

Bulk rna seq qc and normalization starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/bulk-rna-seq-qc-and-normalization-starter · Skill

Cellxgene census atlas query starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/cellxgene-census-atlas-query-starter · Skill

Isoform transcript level analysis starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/isoform-transcript-level-analysis-starter · Skill

Perturb seq starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/perturb-seq-starter · Skill

Pseudobulk analysis starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/pseudobulk-analysis-starter · Skill

Pydeseq2 differential expression starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/pydeseq2-differential-expression-starter · Skill

Rna velocity starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/rna-velocity-starter · Skill

Scanpy cell type annotation starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-cell-type-annotation-starter · Skill

Scanpy combat batch correction starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-combat-batch-correction-starter · Skill

Scanpy dpt trajectory starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-dpt-trajectory-starter · Skill

Scanpy qc starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-qc-starter · Skill

Scanpy ranked genes starter

ma-compbio-lab/SkillFoundry/skills/transcriptomics/scanpy-ranked-genes-starter · Skill