Taxonomy refinement starter

ma-compbio-lab/SkillFoundry/skills/meta-maintenance/taxonomy-refinement-starter · Skill

Differential metabolomics starter

ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/differential-metabolomics-starter · Skill

Feature annotation starter

ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/feature-annotation-starter · Skill

Lipidomics starter

ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/lipidomics-starter · Skill

Metabolomics preprocessing starter

ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/metabolomics-preprocessing-starter · Skill

Microbiome analysis starter

ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/microbiome-analysis-starter · Skill

Multi omics integration starter

ma-compbio-lab/SkillFoundry/skills/metabolomics-and-other-omics/multi-omics-integration-starter · Skill

Brain atlas integration starter

ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/brain-atlas-integration-starter · Skill

Computational psychiatry and clinical neuroinformatics starter

ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/computational-psychiatry-and-clinical-neuroinformatics-starter · Skill

Mne connectivity graph starter

ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/mne-connectivity-graph-starter · Skill

Mne eeg preprocessing starter

ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/mne-eeg-preprocessing-starter · Skill

Multimodal neuroimaging fusion starter

ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/multimodal-neuroimaging-fusion-starter · Skill

Neural decoding and encoding models starter

ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/neural-decoding-and-encoding-models-starter · Skill

Nibabel nifti summary starter

ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/nibabel-nifti-summary-starter · Skill

Nilearn fmri denoising starter

ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/nilearn-fmri-denoising-starter · Skill

Spike sorting and electrophysiology starter

ma-compbio-lab/SkillFoundry/skills/neuroscience-and-neuroimaging/spike-sorting-and-electrophysiology-starter · Skill

Astropy fits image summary starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/astropy-fits-image-summary-starter · Skill

Cosmology and sky survey analysis starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/cosmology-and-sky-survey-analysis-starter · Skill

Differentiable simulation starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/differentiable-simulation-starter · Skill

High energy detector data analysis starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/high-energy-detector-data-analysis-starter · Skill

Inverse problems and scientific reconstruction starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/inverse-problems-and-scientific-reconstruction-starter · Skill

Operator learning and surrogate physics models starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/operator-learning-and-surrogate-physics-models-starter · Skill

Pde cfd simulation workflows starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/pde-cfd-simulation-workflows-starter · Skill

Scientific time series anomaly detection starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/scientific-time-series-anomaly-detection-starter · Skill

Spectroscopy and signal extraction starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/spectroscopy-and-signal-extraction-starter · Skill

Symbolic discovery of physical laws starter

ma-compbio-lab/SkillFoundry/skills/physics-and-astronomy/symbolic-discovery-of-physical-laws-starter · Skill

Differential proteomics starter

ma-compbio-lab/SkillFoundry/skills/proteomics/differential-proteomics-starter · Skill

Interface analysis starter

ma-compbio-lab/SkillFoundry/skills/proteomics/interface-analysis-starter · Skill

Ms proteomics preprocessing starter

ma-compbio-lab/SkillFoundry/skills/proteomics/ms-proteomics-preprocessing-starter · Skill

Protein embeddings starter

ma-compbio-lab/SkillFoundry/skills/proteomics/protein-embeddings-starter · Skill

Protein identification quantification starter

ma-compbio-lab/SkillFoundry/skills/proteomics/protein-identification-quantification-starter · Skill

Protein language model function analysis starter

ma-compbio-lab/SkillFoundry/skills/proteomics/protein-language-model-function-analysis-starter · Skill

Protein structure cross links starter

ma-compbio-lab/SkillFoundry/skills/proteomics/protein-structure-cross-links-starter · Skill

Ptm analysis starter

ma-compbio-lab/SkillFoundry/skills/proteomics/ptm-analysis-starter · Skill

Sequence to function modeling starter

ma-compbio-lab/SkillFoundry/skills/proteomics/sequence-to-function-modeling-starter · Skill

Uniprot sequence feature annotation starter

ma-compbio-lab/SkillFoundry/skills/proteomics/uniprot-sequence-feature-annotation-starter · Skill

Conda mamba pixi uv starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/conda-mamba-pixi-uv-starter · Skill

Cwl commandlinetool starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/cwl-commandlinetool-starter · Skill

Cwl workflows starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/cwl-workflows-starter · Skill

Docker apptainer singularity starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/docker-apptainer-singularity-starter · Skill

Environment locking starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/environment-locking-starter · Skill

Github actions scientific ci starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/github-actions-scientific-ci-starter · Skill

Papermill parameterized notebook starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/papermill-parameterized-notebook-starter · Skill

Snakemake toy workflow starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/snakemake-toy-workflow-starter · Skill

Wdl task starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/wdl-task-starter · Skill

Wdl workflows starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/wdl-workflows-starter · Skill

Workflow interoperability and translation starter

ma-compbio-lab/SkillFoundry/skills/reproducible-workflows/workflow-interoperability-and-translation-starter · Skill

Active learning experiment loops starter

ma-compbio-lab/SkillFoundry/skills/robotics-lab-automation-and-scientific-instrumentation/active-learning-experiment-loops-starter · Skill

Automated microscopy acquisition starter

ma-compbio-lab/SkillFoundry/skills/robotics-lab-automation-and-scientific-instrumentation/automated-microscopy-acquisition-starter · Skill

Autoprotocol experiment plan starter

ma-compbio-lab/SkillFoundry/skills/robotics-lab-automation-and-scientific-instrumentation/autoprotocol-experiment-plan-starter · Skill

Closed loop optimization for experiments starter

ma-compbio-lab/SkillFoundry/skills/robotics-lab-automation-and-scientific-instrumentation/closed-loop-optimization-for-experiments-starter · Skill

Eln lims sample tracking integration starter

ma-compbio-lab/SkillFoundry/skills/robotics-lab-automation-and-scientific-instrumentation/eln-lims-sample-tracking-integration-starter · Skill

Laboratory robotics safety and monitoring starter

ma-compbio-lab/SkillFoundry/skills/robotics-lab-automation-and-scientific-instrumentation/laboratory-robotics-safety-and-monitoring-starter · Skill

Opentrons liquid handling protocol starter

ma-compbio-lab/SkillFoundry/skills/robotics-lab-automation-and-scientific-instrumentation/opentrons-liquid-handling-protocol-starter · Skill

Qcodes parameter sweep starter

ma-compbio-lab/SkillFoundry/skills/robotics-lab-automation-and-scientific-instrumentation/qcodes-parameter-sweep-starter · Skill

Code generation agents for scientific tasks starter

ma-compbio-lab/SkillFoundry/skills/scientific-agents-and-automation/code-generation-agents-for-scientific-tasks-starter · Skill

Inspect evaluation harness starter

ma-compbio-lab/SkillFoundry/skills/scientific-agents-and-automation/inspect-evaluation-harness-starter · Skill

Langgraph planning execution agent starter

ma-compbio-lab/SkillFoundry/skills/scientific-agents-and-automation/langgraph-planning-execution-agent-starter · Skill

Literature to hypothesis agents starter

ma-compbio-lab/SkillFoundry/skills/scientific-agents-and-automation/literature-to-hypothesis-agents-starter · Skill

Long horizon agent memory and provenance starter

ma-compbio-lab/SkillFoundry/skills/scientific-agents-and-automation/long-horizon-agent-memory-and-provenance-starter · Skill