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Engineering

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  • Train validation test split management

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/train-validation-test-split-management Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Word embedding aggregation for spectral data

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/word-embedding-aggregation-for-spectral-data Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Word embedding based spectrum representation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/word-embedding-based-spectrum-representation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Word2vec embedding training mass spectrometry

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/word2vec-embedding-training-mass-spectrometry Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow routing configuration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/workflow-routing-configuration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Xcms parameter optimization msw

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/xcms-parameter-optimization-msw Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Xcms workflow execution

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/xcms-workflow-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Accurate mass database search

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/accurate-mass-database-search Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Binary spectral data extraction

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/binary-spectral-data-extraction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Ccs reference data extraction

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/ccs-reference-data-extraction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Cnn transformer hybrid architecture design

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/cnn-transformer-hybrid-architecture-design Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Collision energy optimization for fragmentation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/collision-energy-optimization-for-fragmentation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Command line interface configuration and automation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/command-line-interface-configuration-and-automation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Command line tool invocation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/command-line-tool-invocation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Cross software feature matching

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/cross-software-feature-matching Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Deep learning model architecture design

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/deep-learning-model-architecture-design Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Distance geometry embedding

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/distance-geometry-embedding Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Extraction parameter optimization ppm retention time ion mobility

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/extraction-parameter-optimization-ppm-retention-time-ion-mobility Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Format agnostic data ingestion

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/format-agnostic-data-ingestion Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Graph neural network architecture implementation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/graph-neural-network-architecture-implementation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Hierarchical clustering parameter optimization

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/hierarchical-clustering-parameter-optimization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • In memory optimization for large datasets

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/in-memory-optimization-for-large-datasets Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Inference performance benchmarking

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/inference-performance-benchmarking Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Instrument agnostic feature engineering

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/instrument-agnostic-feature-engineering Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Ion mobility feature engineering

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/ion-mobility-feature-engineering Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Jupyter notebook workflow execution

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/jupyter-notebook-workflow-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Large scale database construction

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/large-scale-database-construction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Lipid class coverage assessment

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/lipid-class-coverage-assessment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Lipid database query and annotation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/lipid-database-query-and-annotation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Mass spectrometry metadata caching

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/mass-spectrometry-metadata-caching Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Mass spectrometry metric engineering

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/mass-spectrometry-metric-engineering Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Mass spectrometry workflow orchestration snakemake

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/mass-spectrometry-workflow-orchestration-snakemake Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Mass spectrometry workflow orchestration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/mass-spectrometry-workflow-orchestration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Matplotlib bokeh plotly backend switching

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/matplotlib-bokeh-plotly-backend-switching Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Metabolite taxonomy database lookup

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/metabolite-taxonomy-database-lookup Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Module coverage mapping

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/module-coverage-mapping Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Module dispatch architecture analysis

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/module-dispatch-architecture-analysis Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Molecular conformer generation and optimization

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/molecular-conformer-generation-and-optimization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Molecular database loading and parsing

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/molecular-database-loading-and-parsing Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Msi preprocessing parameter configuration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/msi-preprocessing-parameter-configuration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Multi backend visualization abstraction

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/multi-backend-visualization-abstraction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Neural network model deployment in python

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/neural-network-model-deployment-in-python Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Peak detection cwt optimization

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/peak-detection-cwt-optimization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Peak integration parameter optimization

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/peak-integration-parameter-optimization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Preprocessing pipeline parameter optimization

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/preprocessing-pipeline-parameter-optimization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Regression performance metric computation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/regression-performance-metric-computation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Saturation threshold configuration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/saturation-threshold-configuration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Separation technique workflow alignment

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/separation-technique-workflow-alignment Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Simulation control loop architecture

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/simulation-control-loop-architecture Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Software architecture documentation review

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/software-architecture-documentation-review Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Spatial feature embedding

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/spatial-feature-embedding Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Spectral database matching

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/spectral-database-matching Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Targeted dia data extraction from raw spectra

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/targeted-dia-data-extraction-from-raw-spectra Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Toml configuration file preparation

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/toml-configuration-file-preparation Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Unified api design for heterogeneous data sources

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/unified-api-design-for-heterogeneous-data-sources Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow orchestration and parallelization

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/workflow-orchestration-and-parallelization Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow reconstruction

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/workflow-reconstruction Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Workflow routing configuration

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/workflow-routing-configuration Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Xcms workflow execution

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/xcms-workflow-execution Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

  • Accurate mass database search

    HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/accurate-mass-database-search Skill

    15★ repo

    Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder