2,072 of these skill files have been read, by 1,193 distinct authors, and what they tell an agent counted. What Context & AI engineering authors agree on, and what they forbid

• 15481

  Tsne embedding dimensionality reduction

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/tsne-embedding-dimensionality-reduction · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15482

  Word embedding aggregation for spectral data

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/word-embedding-aggregation-for-spectral-data · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15483

  Word embedding based spectrum representation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/word-embedding-based-spectrum-representation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15484

  Word2vec embedding training mass spectrometry

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/word2vec-embedding-training-mass-spectrometry · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15485

  Workflow orchestration and parallelization

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-orchestration-and-parallelization · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15486

  Lazy computation orchestration with dask

  HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/lazy-computation-orchestration-with-dask · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15487

  Memory efficient single cell computation

  HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/memory-efficient-single-cell-computation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15488

  Seurat workflow orchestration for scrnaseq

  HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/seurat-workflow-orchestration-for-scrnaseq · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15489

  Transcript quantification benchmark comparison

  HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/transcript-quantification-benchmark-comparison · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15490

  Umap embedding visualization

  HolobiomicsLab/asb-skill-collections/collections/transcriptomics/v1/skills/umap-embedding-visualization · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15491

  Embedding space representation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/direct-infusion/skills/embedding-space-representation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15492

  Knime workflow orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/direct-infusion/skills/knime-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15493

  Parallel computing workflow orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/parallel-computing-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15494

  Spectral peak word embedding representation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/spectral-peak-word-embedding-representation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15495

  Word embedding aggregation for spectral data

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/word-embedding-aggregation-for-spectral-data · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15496

  Word embedding based spectrum representation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/word-embedding-based-spectrum-representation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15497

  Word2vec embedding training mass spectrometry

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/gc-ms/skills/word2vec-embedding-training-mass-spectrometry · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15498

  Distance geometry embedding

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/distance-geometry-embedding · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15499

  In memory optimization for large datasets

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/in-memory-optimization-for-large-datasets · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15500

  Mass spectrometry workflow orchestration snakemake

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/mass-spectrometry-workflow-orchestration-snakemake · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15501

  Mass spectrometry workflow orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/mass-spectrometry-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15502

  Spatial feature embedding

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/spatial-feature-embedding · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15503

  Workflow orchestration and parallelization

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/ion-mobility/skills/workflow-orchestration-and-parallelization · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15504

  Annotation benchmark performance evaluation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/annotation-benchmark-performance-evaluation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15505

  Benchmark harness execution

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/benchmark-harness-execution · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15506

  Ci cd pipeline orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/ci-cd-pipeline-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15507

  Clustering tool orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/clustering-tool-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15508

  Embedding similarity computation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/embedding-similarity-computation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15509

  Embedding space dimensionality reduction

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/embedding-space-dimensionality-reduction · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15510

  Embedding space normalization and geometry

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/embedding-space-normalization-and-geometry · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15511

  Embedding space visualization and interpretation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/embedding-space-visualization-and-interpretation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15512

  Few shot learning calibration design

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/few-shot-learning-calibration-design · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15513

  Heterogeneous graph embedding design

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/heterogeneous-graph-embedding-design · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15514

  In memory optimization for large datasets

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/in-memory-optimization-for-large-datasets · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15515

  Interactive plot embedding

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/interactive-plot-embedding · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15516

  Knime workflow orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/knime-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15517

  Laplacian embedding spectral alignment

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/laplacian-embedding-spectral-alignment · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15518

  Lc ms scan acquisition orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/lc-ms-scan-acquisition-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15519

  Lcms workflow orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/lcms-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15520

  Mass spectra embedding extraction

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/mass-spectra-embedding-extraction · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15521

  Mass spectrometry benchmark analysis

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/mass-spectrometry-benchmark-analysis · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15522

  Mass spectrometry embedding generation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/mass-spectrometry-embedding-generation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15523

  Mass spectrometry spectral embedding learning

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/mass-spectrometry-spectral-embedding-learning · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15524

  Mass spectrometry workflow orchestration snakemake

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/mass-spectrometry-workflow-orchestration-snakemake · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15525

  Mass spectrometry workflow orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/mass-spectrometry-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15526

  Mass spectrum embedding generation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/mass-spectrum-embedding-generation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15527

  Metabolite database embedding lookup

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/metabolite-database-embedding-lookup · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15528

  Multidimensional scaling embedding

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/multidimensional-scaling-embedding · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15529

  Natural products workflow orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/natural-products-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15530

  Neural network inference and embedding extraction

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/neural-network-inference-and-embedding-extraction · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15531

  Nextflow pipeline orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/nextflow-pipeline-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15532

  Python workflow execution and orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/python-workflow-execution-and-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15533

  Qr code generation and embedding

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/qr-code-generation-and-embedding · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15534

  R bioconductor workflow orchestration

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/r-bioconductor-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15535

  Siamese network embedding generation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/siamese-network-embedding-generation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15536

  Spectral embedding extraction from neural networks

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/spectral-embedding-extraction-from-neural-networks · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15537

  Spectral embedding generation

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/spectral-embedding-generation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15538

  Spectral embedding rationality verification

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/spectral-embedding-rationality-verification · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15539

  Spectral molecular embedding alignment

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/spectral-molecular-embedding-alignment · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 15540

  Spectral peak embedding encoding

  HolobiomicsLab/asb-skill-collections/packs/metabolomics/lc-ms/skills/spectral-peak-embedding-encoding · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder