920 of these skill files have been read, by 813 distinct authors, and what they tell an agent counted. What Workflow automation authors agree on, and what they forbid

• 6001

  Cross workflow format translation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/cross-workflow-format-translation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6002

  Feature branch workflow management

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/feature-branch-workflow-management · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6003

  File i o automation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/file-i-o-automation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6004

  Ftms mass calibration workflow

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/ftms-mass-calibration-workflow · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6005

  Git branch workflow validation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/git-branch-workflow-validation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6006

  Github actions workflow configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/github-actions-workflow-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6007

  Github actions workflow execution

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/github-actions-workflow-execution · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6008

  Github actions workflow inspection and execution

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/github-actions-workflow-inspection-and-execution · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6009

  Gnps workflow identification

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/gnps-workflow-identification · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6010

  Gnps workflow identifier retrieval

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/gnps-workflow-identifier-retrieval · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6011

  Gnps workflow result processing

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/gnps-workflow-result-processing · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6012

  Hash based deduplication workflow

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/hash-based-deduplication-workflow · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6013

  Interactive workflow validation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/interactive-workflow-validation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6014

  Ion image quantification workflow

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/ion-image-quantification-workflow · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6015

  Jupyter notebook workflow automation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/jupyter-notebook-workflow-automation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6016

  Jupyter notebook workflow execution

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/jupyter-notebook-workflow-execution · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6017

  Knime workflow orchestration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/knime-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6018

  Lcms workflow orchestration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/lcms-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6019

  Library integration workflow

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/library-integration-workflow · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6020

  Mass spectrometry workflow orchestration snakemake

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/mass-spectrometry-workflow-orchestration-snakemake · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6021

  Mass spectrometry workflow orchestration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/mass-spectrometry-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6022

  Metabolite identity ground truth validation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/metabolite-identity-ground-truth-validation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6023

  Metabolomic meta analysis workflow design

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/metabolomic-meta-analysis-workflow-design · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6024

  Metabolomic workflow ranking visualization

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/metabolomic-workflow-ranking-visualization · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6025

  Metabolomics functional prediction workflow validation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/metabolomics-functional-prediction-workflow-validation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6026

  Metabolomics workflow step enumeration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/metabolomics-workflow-step-enumeration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6027

  Msconvert workflow configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/msconvert-workflow-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6028

  Natural products workflow orchestration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/natural-products-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6029

  Nextflow workflow execution

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/nextflow-workflow-execution · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6030

  Nextflow workflow orchestration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/nextflow-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6031

  Nmr workflow pipeline execution

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/nmr-workflow-pipeline-execution · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6032

  Nontargeted analysis workflow execution

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/nontargeted-analysis-workflow-execution · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6033

  Over representation analysis workflow

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/over-representation-analysis-workflow · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6034

  Parallel computing workflow orchestration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/parallel-computing-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6035

  Preprocessing workflow comparative ranking

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/preprocessing-workflow-comparative-ranking · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6036

  Python workflow execution and orchestration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-workflow-execution-and-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6037

  Python workflow scripting

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-workflow-scripting · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6038

  Qc workflow component inspection

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/qc-workflow-component-inspection · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6039

  R bioconductor omics workflow

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-bioconductor-omics-workflow · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6040

  R bioconductor workflow orchestration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-bioconductor-workflow-orchestration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6041

  R function workflow execution

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-function-workflow-execution · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6042

  R package workflow implementation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-package-workflow-implementation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6043

  R workflow implementation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-workflow-implementation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6044

  R workflow scripting for analytical chemistry

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-workflow-scripting-for-analytical-chemistry · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6045

  Script repository workflow integration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/script-repository-workflow-integration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6046

  Separation technique workflow alignment

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/separation-technique-workflow-alignment · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6047

  Spectral library integration workflow

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/spectral-library-integration-workflow · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6048

  Spectral workflow validation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/spectral-workflow-validation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6049

  Untargeted metabolomics workflow implementation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/untargeted-metabolomics-workflow-implementation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6050

  Workflow architecture documentation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-architecture-documentation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6051

  Workflow branching logic design

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-branching-logic-design · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6052

  Workflow build system usage

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-build-system-usage · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6053

  Workflow configuration and parameterization

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-configuration-and-parameterization · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6054

  Workflow configuration parsing

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-configuration-parsing · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6055

  Workflow context preservation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-context-preservation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6056

  Workflow definition schema validation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-definition-schema-validation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6057

  Workflow orchestration and parallelization

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-orchestration-and-parallelization · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6058

  Workflow output validation and qa

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-output-validation-and-qa · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6059

  Workflow pipeline execution validation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-pipeline-execution-validation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6060

  Workflow reconstruction

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/workflow-reconstruction · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder