1,011 of these skill files have been read, by 858 distinct authors, and what they tell an agent counted. What Architecture & codebase authors agree on, and what they forbid

• 6121

  Neural network architecture extension

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/neural-network-architecture-extension · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6122

  Neural network architecture instantiation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/neural-network-architecture-instantiation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6123

  Neural network architecture training

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/neural-network-architecture-training · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6124

  Neural network module architecture design

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/neural-network-module-architecture-design · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6125

  Neural network regularization configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/neural-network-regularization-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6126

  Nextflow pipeline configuration hpc

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/nextflow-pipeline-configuration-hpc · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6127

  Notification configuration management

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/notification-configuration-management · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6128

  Orchestrator architecture design

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/orchestrator-architecture-design · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6129

  Package manager environment setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/package-manager-environment-setup · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6130

  Parameter configuration conditional logic

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/parameter-configuration-conditional-logic · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6131

  Peak picking parameter configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/peak-picking-parameter-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6132

  Plate layout parameter configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/plate-layout-parameter-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6133

  Platform specific code refactoring

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/platform-specific-code-refactoring · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6134

  Port mapping configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/port-mapping-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6135

  Pull request change tracking

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/pull-request-change-tracking · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6136

  Python environment configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-environment-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6137

  Python environment setup and reproducibility

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-environment-setup-and-reproducibility · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6138

  Python environment setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-environment-setup · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6139

  Python package environment setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-package-environment-setup · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6140

  Python package migration and refactoring

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/python-package-migration-and-refactoring · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6141

  Quality control metric threshold configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/quality-control-metric-threshold-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6142

  Quantitative mode metabolomics configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/quantitative-mode-metabolomics-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6143

  R package parameter configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-package-parameter-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6144

  R parallel backend configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-parallel-backend-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6145

  R script configuration and editing

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/r-script-configuration-and-editing · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6146

  Repository cloning and setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/repository-cloning-and-setup · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6147

  Repository environment setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/repository-environment-setup · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6148

  Repository source code setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/repository-source-code-setup · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6149

  Resnet architecture modification for dimensionality control

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/resnet-architecture-modification-for-dimensionality-control · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6150

  Rest api contract documentation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/rest-api-contract-documentation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6151

  Saturation threshold configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/saturation-threshold-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6152

  Scaffold extraction from molecular structures

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/scaffold-extraction-from-molecular-structures · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6153

  Search mode configuration optimization

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/search-mode-configuration-optimization · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6154

  Sequence to sequence architecture design

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/sequence-to-sequence-architecture-design · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6155

  Shell environment setup and dependency management

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/shell-environment-setup-and-dependency-management · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6156

  Shiny app configuration deployment

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/shiny-app-configuration-deployment · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6157

  Shiny plot export configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/shiny-plot-export-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6158

  Siamese architecture module integration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/siamese-architecture-module-integration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6159

  Siamese architecture scoring

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/siamese-architecture-scoring · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6160

  Siamese network architecture modification

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/siamese-network-architecture-modification · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6161

  Siamese neural network architecture design

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/siamese-neural-network-architecture-design · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6162

  Signal apodization configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/signal-apodization-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6163

  Simulation control loop architecture

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/simulation-control-loop-architecture · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6164

  Singularity container backend setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/singularity-container-backend-setup · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6165

  Software architecture documentation review

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/software-architecture-documentation-review · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6166

  Software dependency management and environment setup

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/software-dependency-management-and-environment-setup · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6167

  Statistical test configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/statistical-test-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6168

  Structural scaffold feature identification

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/structural-scaffold-feature-identification · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6169

  System configuration documentation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/system-configuration-documentation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6170

  System environment configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/system-environment-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6171

  System path environment configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/system-path-environment-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6172

  Targeted metabolite screening mode configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/targeted-metabolite-screening-mode-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6173

  Targeted peak integration configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/targeted-peak-integration-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6174

  Toml configuration file generation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/toml-configuration-file-generation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6175

  Toml configuration file preparation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/toml-configuration-file-preparation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6176

  Tool parameter configuration

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/tool-parameter-configuration · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6177

  Transformer architecture implementation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/transformer-architecture-implementation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6178

  Transformer architecture inference

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/transformer-architecture-inference · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6179

  Transformer encoder architecture design

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/transformer-encoder-architecture-design · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder

• 6180

  Transformer encoder architecture implementation

  HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/transformer-encoder-architecture-implementation · Skill

  15★ repo

  Curated, evidence-grounded skill and software-tool collections for scientific AI agents, generated by the AgenticScienceBuilder