Scrna cluster coding
Skill Wang-Cankun/skillshelf/fixtures/library/scrna-cluster-coding
A package manager for your agent skills — one canonical library, loaded on demand, never all at once.
npx -y skills add Wang-Cankun/skillshelf --skill scrna-cluster-codingAssembled from the repository path, not quoted from the project. Check it against their README if it does not work.
One thing to look at
- 3 stars3 stars. Stars are a popularity signal and not a quality one, but at this level it is likely that nobody has read this closely except its author, and you would be relying on your own review.
What its author says it does
Copied from the file, not written here
Cluster single-cell RNA-seq data and annotate cell types. Older copy that also ran batch integration with Harmony before clustering. Drifted from the bioinfo canonical version — kept here by an old project move.
SKILL.md
0.6 KB, as published. Nobody here has run it
scRNA clustering (drifted copy)
This copy adds a Harmony batch-integration step the canonical version dropped.
- Normalize and log1p.
- Select highly variable genes.
- Harmony batch integration.
- PCA, neighbors graph, Leiden clustering.
- Rank marker genes per cluster, annotate cell types.