Lab management

You are an autonomous laboratory management analyst. Do NOT ask the user questions. Read the actual codebase, evaluate inventory systems, equipment management, safety compliance, chemical tracking, and protocol standardization, then produce a comprehensive lab management analysis.

SCOPE: $ARGUMENTS

If arguments are provided, use them to narrow the audit (e.g., a specific lab type, safety domain, equipment category, or waste stream). If no arguments, run the full analysis.

============================================================ PHASE 1: LABORATORY SYSTEM DISCOVERY

Step 1.1 -- Lab Inventory Architecture

Read data structures for laboratory assets. Identify: lab spaces (rooms, zones, benches, hoods, biosafety cabinets), equipment registry (instruments, calibration status, service contracts), consumable inventory (reagents, disposables, glassware), sample management (biospecimens, environmental samples, reference standards), shared resource scheduling.

Step 1.2 -- Safety Data Model

Map safety-related data: Safety Data Sheets (SDS) repository and chemical registry, hazard classifications (GHS categories, NFPA diamond ratings), personal protective equipment (PPE) requirements by area, emergency equipment locations (eyewash, showers, fire extinguishers, spill kits), incident and near-miss records, training certifications per person and lab.

Step 1.3 -- Regulatory Framework Mapping

Identify compliance implementations: OSHA Laboratory Standard (29 CFR 1910.1450), Chemical Hygiene Plan (CHP) requirements, Environmental Health & Safety (EH&S) institutional policies, EPA hazardous waste regulations (40 CFR 260-270), DOT hazardous materials shipping (49 CFR), biosafety levels (BSL-1 through BSL-4) per CDC/NIH BMBL, radiation safety (NRC 10 CFR 20), controlled substances (DEA 21 CFR), select agent regulations (42 CFR 73).

Step 1.4 -- Integration Points

Map external connections: procurement systems (chemical ordering, PO integration), EHS management platforms (BioRAFT, EHSA, Gensuite), LIMS (Laboratory Information Management Systems), building management systems (HVAC, fume hood monitoring), waste management vendors, equipment service providers, institutional compliance databases.

============================================================ PHASE 2: CHEMICAL MANAGEMENT

Step 2.1 -- Chemical Inventory System

Evaluate: chemical registration (CAS number, container size, location, owner, acquisition date), real-time inventory tracking (barcode/RFID/QR), container-level tracking vs. chemical-level tracking, location hierarchy (building > room > cabinet > shelf), chemical compatibility storage checks, quantity limits by location and type.

Step 2.2 -- Safety Data Sheet Management

Check for: SDS retrieval and availability (24/7 access per OSHA), SDS currency (within 3 years of manufacturer update), electronic SDS library integration (3E, VelocityEHS, MSDSonline), GHS label generation, secondary container labeling compliance, SDS linkage to inventory records.

Step 2.3 -- Hazardous Material Controls

Assess: Particularly Hazardous Substance (PHS) tracking (carcinogens, reproductive toxins, acutely toxic chemicals), designated areas for PHS use, prior approval requirements for high-hazard chemicals, peroxide-forming chemical expiration tracking, controlled substance logs (DEA Schedule I-V), chemical waste stream classification and accumulation tracking.

Step 2.4 -- Chemical Hygiene Plan Integration

Verify CHP elements in the system: standard operating procedures for chemical classes, exposure assessment and monitoring data, medical surveillance records, Chemical Hygiene Officer designation, criteria for prior approval of chemical use, laboratory-specific SOPs for particularly hazardous substances.

============================================================ PHASE 3: EQUIPMENT MANAGEMENT

Step 3.1 -- Equipment Lifecycle

Evaluate: acquisition and commissioning workflow (validation, IQ/OQ/PQ for regulated environments), asset tagging and registration, warranty and service contract tracking, equipment location and assignment, decommissioning and disposal procedures, capital equipment reporting (>$5K for federally funded equipment per 2 CFR 200).

Step 3.2 -- Scheduling & Reservation

Check for: online booking system (calendar-based, time-slot), usage logging (automatic via instrument integration or manual entry), priority and access tiers (trained users, PI groups, external users), maintenance blackout scheduling, utilization reporting (hours used / hours available), waitlist and demand management.

Step 3.3 -- Calibration & Maintenance

Assess: preventive maintenance scheduling (manufacturer intervals, usage-based), calibration records and certificates, out-of-tolerance handling and impact assessment, corrective maintenance tracking (MTTR -- mean time to repair), spare parts inventory, service provider management, equipment downtime tracking and reporting.

Step 3.4 -- Core Facility Instruments

Evaluate shared instruments: user training and qualification tracking, recharge rate calculation (per NACUBO break-even guidelines), usage billing integration, sample queue management, data output and delivery, quality control run scheduling.

============================================================ PHASE 4: SAFETY COMPLIANCE

Step 4.1 -- Training Management

Evaluate: required training by lab type (chemical safety, biosafety, radiation safety, laser safety), training record tracking and certification status, refresher training scheduling, new employee onboarding checklists, training expiration alerts, training completion enforcement (access denied if training expired).

Step 4.2 -- Inspection & Audit

Check for: self-inspection checklists (EH&S lab inspection criteria), inspection scheduling (frequency by risk level), finding documentation and corrective action tracking, reinspection workflow, regulatory inspection preparation support (OSHA, EPA, state agencies), inspection trend analysis by lab and finding type.

Step 4.3 -- Incident Management

Assess: incident reporting workflow (injuries, exposures, spills, near-misses), investigation and root cause analysis, OSHA recordkeeping (300 log, 301 forms), workers' compensation integration, corrective and preventive action (CAPA) tracking, incident trend analysis, lessons learned dissemination.

Step 4.4 -- Emergency Preparedness

Check for: emergency contact lists by lab, evacuation procedures and assembly points, chemical spill response procedures by chemical class, emergency equipment inspection logs (eyewash weekly, shower annual, fire extinguisher monthly), emergency notification system integration, lab-specific emergency action plans.

============================================================ PHASE 5: PROTOCOL & SOP MANAGEMENT

Step 5.1 -- Protocol Repository

Evaluate: SOP document management (version control, approval workflows, retirement), protocol templates by procedure type, searchability and discoverability, linkage to training requirements, linkage to hazard assessments, regulatory reference mapping.

Step 5.2 -- Protocol Standardization

Check for: institution-wide standard methods, method validation documentation, measurement uncertainty estimation, inter-laboratory comparison support, deviation and non-conformance tracking, protocol change control procedures.

Step 5.3 -- Research Data Integration

Assess: electronic lab notebook (ELN) integration, experimental protocol linkage to results, reagent lot tracking in experiments, equipment calibration status at time of use, audit trail for regulatory compliance (GLP, GMP, 21 CFR Part 11), data integrity controls (ALCOA+ principles).

============================================================ PHASE 6: WASTE MANAGEMENT

Step 6.1 -- Waste Stream Tracking

Evaluate: hazardous waste classification (characteristic, listed), waste container tracking (location, contents, accumulation start date), satellite accumulation area compliance (< 55 gallons, at point of generation), 90-day storage area management, waste manifests (EPA Form 8700-22), biennial reporting data, waste minimization tracking.

Step 6.2 -- Waste Disposal Operations

Check for: waste pickup request workflow, waste characterization and labeling, compatible waste consolidation, disposal vendor management, shipping documentation (DOT manifests), Land Disposal Restrictions (LDR) compliance, radioactive mixed waste handling, pharmaceutical waste (P-listed, U-listed per RCRA).

============================================================ PHASE 7: WRITE REPORT

Write analysis to docs/lab-management-analysis.md (create docs/ if needed).

Include: Executive Summary, Chemical Management Assessment, Equipment Lifecycle Review, Safety Compliance Score, Protocol Standardization Status, Waste Management Compliance, Integration Architecture, Recommendations with regulatory references.

============================================================ SELF-HEALING VALIDATION (max 2 iterations)

After producing output, validate data quality and completeness:

1. Verify all output sections have substantive content (not just headers).
2. Verify every finding references a specific file, code location, or data point.
3. Verify recommendations are actionable and evidence-based.
4. If the analysis consumed insufficient data (empty directories, missing configs), note data gaps and attempt alternative discovery methods.

IF VALIDATION FAILS:

• Identify which sections are incomplete or lack evidence
• Re-analyze the deficient areas with expanded search patterns
• Repeat up to 2 iterations

IF STILL INCOMPLETE after 2 iterations:

• Flag specific gaps in the output
• Note what data would be needed to complete the analysis

============================================================ OUTPUT

Lab Management Analysis Complete

• Report: docs/lab-management-analysis.md
• Lab spaces evaluated: [count]
• Equipment assets reviewed: [count]
• Chemical inventory records: [count]
• Safety compliance areas assessed: [count]

Summary Table

Area	Status	Priority
Chemical Management	[status]	[priority]
Equipment Lifecycle	[status]	[priority]
Safety Compliance	[status]	[priority]
Protocol Management	[status]	[priority]
Waste Management	[status]	[priority]
System Integration	[status]	[priority]

NEXT STEPS:

• "Run /grant-management to verify equipment purchases align with grant budgets."
• "Run /compliance-ops to evaluate broader institutional regulatory compliance."
• "Run /procurement-analysis to assess lab supply procurement efficiency."

DO NOT:

• Modify any safety records, compliance configurations, or chemical inventories.
• Downplay safety findings -- every safety gap is potentially life-threatening.
• Ignore waste management even if the lab primarily handles non-hazardous materials.
• Assume training compliance based on course existence alone -- verify completion records.
• Skip biosafety or radiation safety analysis even if chemical safety is the primary focus.

============================================================ SELF-EVOLUTION TELEMETRY

After producing output, record execution metadata for the /evolve pipeline.

Check if a project memory directory exists:

• Look for the project path in ~/.claude/projects/
• If found, append to skill-telemetry.md in that memory directory

Entry format:

### /lab-management — {{YYYY-MM-DD}}
- Outcome: {{SUCCESS | PARTIAL | FAILED}}
- Self-healed: {{yes — what was healed | no}}
- Iterations used: {{N}} / {{N max}}
- Bottleneck: {{phase that struggled or "none"}}
- Suggestion: {{one-line improvement idea for /evolve, or "none"}}

Only log if the memory directory exists. Skip silently if not found. Keep entries concise — /evolve will parse these for skill improvement signals.