Vault query
Free, MIT-licensed starter skills for a private, self-hosted AI assistant — back itself up, capture ideas, search your notes, self-reflect. Built to adapt, not just copy. The free funnel for the quietdaemon guide + kit.
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Search a local Markdown / Obsidian 'second brain' vault via an MCP filesystem server, with freshness and search-scope gotchas handled. Use when the user asks about their notes, knowledge base, documented decisions, references, or 'what do I know about X?'
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SKILL.md
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Vault Query
Give your assistant read access to a personal Markdown vault (Obsidian or plain
.md files) through an MCP filesystem server, and let it actually find and
surface what's in there. The hard-won part isn't the search call — it's the
two failure modes below that make searches silently come back empty.
Setup
Run an MCP filesystem server scoped to your vault, e.g.:
# in your agent's MCP config
vault_filesystem:
command: npx
args: ["-y", "@modelcontextprotocol/server-filesystem", "<VAULT_PATH>"]
This exposes mcp_vault_filesystem_* tools (read/search/list). If your vault is
a git clone kept fresh by a pull cron, see Step 0.
When to activate
The user asks about:
- Their notes, wiki, or anything they've documented
- Concepts, frameworks, protocols, references, sources
- People, places, or entities they track
- Their decision log, action items, priorities
- "What do I know about X?" / "Pull up my notes on Y"
How to query
Step 0 — Check freshness FIRST (if the vault is a git clone)
If the user writes to the vault from other machines, your local copy is only as fresh as the last pull. Before concluding something isn't there:
cd <VAULT_PATH> && git fetch origin && git log --oneline origin/main -5
If origin/main is ahead, pull before searching:
git pull --rebase origin main
This is the single most common cause of a false "I couldn't find it."
Step 1 — Locate files
mcp_vault_filesystem_search_files with a glob pattern (e.g. *labs*) and the
vault path. ⚠️ This matches FILENAMES, not file contents.
Step 2 — Content search fallback
When the term lives inside a page (not in its filename), glob search misses it. Use grep:
grep -ril "keyword" <VAULT_PATH>/
Step 3 — Read + answer
mcp_vault_filesystem_read_file on the 2–3 most relevant hits, then answer in
your own words from the content.
Always surface the actual findings. Deliver the specific entries / values / dates / names — don't just say "I found it." A lookup the user never sees the result of is worthless.
Pitfalls (the reason this skill exists)
- Stale cache is the #1 false-empty. Run the Step 0
git fetchevery time the vault is a synced clone, not only when something looks missing. - MCP glob search ≠ content search.
search_filesmatches filename patterns only. For words inside files, usegrep -ril. - Filesystem search is case-sensitive on Linux.
*Protocols*and*protocols*can return different results — prefer lowercase unless you know the casing. - Don't over-read. On a broad hit, read the top 2–3 files, not everything.
- Mind privacy scope. Only point the MCP server at directories you intend the assistant to read; it can read everything in scope.