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Report converter

Skill patolojiAI/pathology-skills-collection/pathology-skills/report-converter

Comprehensive clinical pathology toolkit for Claude - skills for CAP/ICCR compliance, TNM staging, synoptic templates, SNOMED coding, tumor board summaries, scientific similarity checking, and reference verification.

Install
npx -y skills add patolojiAI/pathology-skills-collection --skill report-converter

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What its author says it does

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Converts free-text narrative pathology reports into structured CAP synoptic format and generates amendments/addenda/corrections for previously-issued reports. Use when the user uploads or pastes a narrative pathology report (.pdf, .docx, .txt) and asks to "convert to synoptic", "convert to CAP format", "structure this report", "make this synoptic", "generate an amendment", "add an addendum", or "issue a corrected report". Extracts diagnostic elements (tumor type, grade, size, stage, margins, nodes, biomarkers) and maps them to CAP data elements.

The file declares its own license as MIT. That is the author’s claim about this one file, and it is not the same thing as the license GitHub reports for the repository, which is listed with the other numbers below.

SKILL.md

3.1 KB, 545 tokens by cl100k_base, as published. Nobody here has run it

Report Converter

Transform narrative pathology reports into structured CAP synoptic format and generate professional amendments.

When to Use This Skill

Use this skill for:

  • Converting legacy free-text reports to synoptic format
  • Report standardization projects
  • Creating addenda for biomarker results
  • Generating amendment reports
  • Training on synoptic reporting

Dual Functionality

  1. Free-text to Synoptic: Convert narrative reports to CAP format
  2. Amendment Generation: Create addenda and corrections

Key Features

  1. Text Parsing: Extract diagnostic elements from prose
  2. CAP Mapping: Map findings to CAP data elements
  3. Structured Output: Generate CAP synoptic format
  4. Amendment Format: Professional addendum/correction templates
  5. Completeness Check: Flag missing required elements

Reference Files

Reference on-demand (DO NOT load at startup):

  • Conversion guidelines: ../../shared-references/common/freetext_to_synoptic.md
  • Amendment templates: ../../shared-references/common/amendment_generator.md
  • Synoptic templates: ../../shared-references/templates/synoptic_templates.md

Usage Examples

# Convert free-text report
claude "Convert to synoptic format using report-converter" < narrative_report.txt

# Generate addendum
claude "Create addendum for HER2 results using report-converter" < original_report.txt

# Generate amendment
claude "Create amendment correcting tumor size using report-converter"

Processing Instructions

For Free-text Conversion:

  1. Parse narrative report: Extract all diagnostic findings
  2. Identify tumor type: Breast, colorectal, pancreas, gastric
  3. Load appropriate CAP template
  4. Map findings to CAP elements
  5. Flag missing elements: Highlight what's incomplete
  6. Output: Structured synoptic report

For Amendment Generation:

  1. Identify amendment type: Addendum (addition) vs correction
  2. Load amendment template
  3. Format professional amendment with date, reason, updated information
  4. Output: Ready-to-sign addendum

Supported Report Types

  • Breast carcinoma reports
  • Colorectal carcinoma reports
  • Pancreas carcinoma reports
  • Gastric carcinoma reports
  • General carcinoma reports

Amendment Types

  • Addendum: Add new information (biomarkers, special stains)
  • Correction: Fix errors (tumor size, grade, margins)
  • Supplemental: Additional findings after review

Note: Minimal skill definition. References loaded on-demand during processing only.

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