Hypothesis evolve out of box
Skill panjose/Co-Scientist/skills/hypothesis-evolve-out-of-box
Scientific agent skills for Claude Code and Codex that turn research goals into auditable hypothesis generation, review, ranking, evolution, and synthesis.
npx -y skills add panjose/Co-Scientist --skill hypothesis-evolve-out-of-boxAssembled from the repository path, not quoted from the project. Check it against their README if it does not work.
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Generate exactly one divergent but still testable child hypothesis that challenges the shared assumptions of the parent set.
SKILL.md
3.2 KB, as published. Nobody here has run it
hypothesis-evolve-out-of-box
Goal:
- Generate exactly one divergent but still testable child hypothesis that challenges the shared assumptions of the parent set.
Inputs:
research_plan/RESEARCH_PLAN.json- selected parent
hypotheses/<id>/HYPOTHESIS.jsonartifacts - parent review artifacts
- active
state/STRATEGY_PLAN.json
Outputs:
hypotheses/<id>/HYPOTHESIS.jsonhypotheses/<id>/HYPOTHESIS.mdhypotheses/<id>/ORIGIN.json
Context Loading:
- Open
skills/shared-references/schema-index.md. - Read
packages/agent_contracts/hypothesis.pyand confirm the exactHypothesisContractshape before writinghypotheses/<id>/HYPOTHESIS.json. - Read
research_plan/RESEARCH_PLAN.json. - Read
state/STRATEGY_PLAN.json. - Read the selected parent hypotheses and their review bundles.
- Confirm that the round selected
out_of_box_evolution.
Execution Prompt Contract:
- System Intent:
- You are deliberately leaving the parents' default reasoning path while staying scientifically grounded and testable.
- Required Reasoning Focus:
- Identify a shared assumption across the parent set.
- Challenge that assumption with a concrete alternative mechanism.
- Keep the child falsifiable and experimentally actionable.
- Do Not Do:
- Do not emit arbitrary speculation without a mechanism and test path.
- Do not produce a child that is just a noisier parent variant.
- Quality Floor:
- The child must directly address at least one specific weakness from the parent review bundle.
origin.content.statementmust name concrete materials, catalysts, reaction conditions, mechanistic variables, or experimental targets from the parent and research goal.origin.content.mechanismmust explain a causal chain; do not write only generic phrases such asimproved mechanism,targeted improvement, orreview-identified weaknesses.origin.content.experimental_designmust include 3-6 numbered steps with measurable readouts, controls, or decision thresholds.- Do not use generic refinement placeholder steps such as
Apply targeted improvement,Characterize with standard techniques,Benchmark against parent, orValidate improvement quantitatively. - If the research plan, parent hypothesis, or parent review bundle is missing, stop and report the missing artifact instead of guessing.
- Output Shape:
- Emit the canonical
HypothesisContract. origin.strategy:out_of_box_evolution- Keep
summaryexplicit about the divergent mechanism.
- Emit the canonical
Execution Steps:
- Open
skills/shared-references/schema-index.md, then readpackages/agent_contracts/hypothesis.pybefore writinghypotheses/<id>/HYPOTHESIS.json. - Identify the shared parent assumption that should be challenged.
- Produce exactly one divergent but testable child hypothesis.
- Persist canonical
HYPOTHESIS.json,HYPOTHESIS.md, andORIGIN.json. - Validate the emitted hypothesis artifact.
Completion Rule:
- This skill is complete only when one divergent child hypothesis has been written in canonical form.