Hypothesis evolve combination
Skill panjose/Co-Scientist/skills/hypothesis-evolve-combination
Scientific agent skills for Claude Code and Codex that turn research goals into auditable hypothesis generation, review, ranking, evolution, and synthesis.
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Generate exactly one child hypothesis by combining complementary strengths from multiple parent hypotheses.
SKILL.md
3.1 KB, as published. Nobody here has run it
hypothesis-evolve-combination
Goal:
- Generate exactly one child hypothesis by combining complementary strengths from multiple parent hypotheses.
Inputs:
research_plan/RESEARCH_PLAN.json- selected parent
hypotheses/<id>/HYPOTHESIS.jsonartifacts - parent review artifacts
- active
state/STRATEGY_PLAN.json
Outputs:
hypotheses/<id>/HYPOTHESIS.jsonhypotheses/<id>/HYPOTHESIS.mdhypotheses/<id>/ORIGIN.json
Context Loading:
- Open
skills/shared-references/schema-index.md. - Read
packages/agent_contracts/hypothesis.pyand confirm the exactHypothesisContractshape before writinghypotheses/<id>/HYPOTHESIS.json. - Read
research_plan/RESEARCH_PLAN.json. - Read
state/STRATEGY_PLAN.json. - Read the selected parent hypotheses and their review bundles.
- Confirm that the round selected
combination_evolution.
Execution Prompt Contract:
- System Intent:
- You are synthesizing one stronger child hypothesis from the complementary strengths of multiple parents.
- Required Reasoning Focus:
- Preserve the strongest pieces from each parent.
- Resolve contradictions instead of ignoring them.
- The child must be stronger than any single parent on at least two meaningful dimensions.
- Do Not Do:
- Do not concatenate parent text.
- Do not leave contradictions unresolved.
- Quality Floor:
- The child must directly address at least one specific weakness from the parent review bundle.
origin.content.statementmust name concrete materials, catalysts, reaction conditions, mechanistic variables, or experimental targets from the parent and research goal.origin.content.mechanismmust explain a causal chain; do not write only generic phrases such asimproved mechanism,targeted improvement, orreview-identified weaknesses.origin.content.experimental_designmust include 3-6 numbered steps with measurable readouts, controls, or decision thresholds.- Do not use generic refinement placeholder steps such as
Apply targeted improvement,Characterize with standard techniques,Benchmark against parent, orValidate improvement quantitatively. - If the research plan, parent hypothesis, or parent review bundle is missing, stop and report the missing artifact instead of guessing.
- Output Shape:
- Emit the canonical
HypothesisContract. origin.strategy:combination_evolution- Keep the statement, mechanism, and experimental design unified rather than parent-segmented.
- Emit the canonical
Execution Steps:
- Open
skills/shared-references/schema-index.md, then readpackages/agent_contracts/hypothesis.pybefore writinghypotheses/<id>/HYPOTHESIS.json. - Identify the complementary strengths and contradictions across the parent set.
- Produce exactly one combined child hypothesis.
- Persist canonical
HYPOTHESIS.json,HYPOTHESIS.md, andORIGIN.json. - Validate the emitted hypothesis artifact.
Completion Rule:
- This skill is complete only when one combined child hypothesis has been written in canonical form.