Claude cli

Claude CLI Agent

When to Use

⛔ If the host is Claude Code: use Claude CLI only when you specifically need context isolation or a different Anthropic model AND native tools (Task tool, inline work) are insufficient. Claude Code → Claude CLI is last resort. Prefer Copilot CLI for GitHub tasks; prefer Claude Code's native Task tool for general code tasks.

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Use Claude CLI for:

• General code tasks — explanations, refactors, fixes, analysis
• Tasks needing Anthropic-specific models (Sonnet, Opus, Haiku)
• Context isolation — offload long subtasks without polluting the host context
• Tasks where you want a different model than the host is running

Do NOT use Claude CLI for:

• GitHub-specific tasks (PRs, repos, Actions) — use Copilot CLI
• Tasks that need your current session context or open files
• When Claude CLI is not installed or not authenticated

Core Flags

Flag	Purpose
-p "PROMPT"	Print mode — non-interactive, exits when done
--output-format text	Plain text output (default — easiest to parse)
--output-format json	Structured JSON with metadata
--no-session-persistence	Do not save session to disk — keeps scripted calls clean
--max-turns N	Cap agentic turns — prevents runaway tasks
--bare	Minimal mode: skip auto-discovery of hooks, skills, plugins, MCP servers, auto memory, and CLAUDE.md so scripted calls start faster. Claude has access to Bash, file read, and file edit tools

Tool Permissions

Flag	Purpose
--allowedTools "TOOL"	Tools that auto-execute without a permission prompt
--disallowedTools "TOOL"	Tools removed from the model's context entirely

Use case	Flags
Questions, analysis	--allowedTools "Read"
Modify existing files	--allowedTools "Read" "Edit"
Create + modify files	--allowedTools "Read" "Edit" "Write"
Create + modify files + run commands	--allowedTools "Read" "Edit" "Write" "Bash(git *)"
Explicitly block shell	--disallowedTools "Bash"

"Edit" modifies existing files. "Write" creates new files — add it when the task may need to create files.

Shell access (Bash(...)) is a separate, deliberate decision. Use --disallowedTools "Bash" to prevent any shell execution, even if the model tries.

Safety Flags

Flag	Purpose
--max-budget-usd N	Cap API spend (e.g. --max-budget-usd 0.50)
--effort LEVEL	Set the effort level: low, medium, high, xhigh, max — available levels depend on the model. Session-scoped, does not persist
--permission-mode plan	Read-only planning mode — no writes or shell, overrides --allowedTools
--append-system-prompt "TEXT"	Inject task-specific instructions into the system prompt

Model & Effort Selection

Model IDs are versioned and change with releases. Run claude models to get current names.

Task complexity	Model	Effort
Standard — analysis, single fix	--model sonnet	(default)
Complex — multi-step, judgment calls	--model sonnet	--effort high (or xhigh/max)
Quick availability check / ping	--model <fastest-available>	(default)

Use short aliases (sonnet, opus) for the latest version, or full IDs to pin a specific model. Omit --effort to use the model default. --effort is only available for Claude models — omit it when using non-Claude models. Complexity levels are defined in the orchestration skill.

Working Directory

Claude CLI is sandboxed to its working directory — the same restriction as Copilot CLI.

⛔ Always invoke from the repo root. Use --cwd or cd before invoking.

claude -p "..." --cwd $(git rev-parse --show-toplevel) --output-format text ...

Invocation Patterns

Always include --append-system-prompt with the CortexLink agent context below. This teaches the agent the report format and self-verify protocol via the system prompt — separate from the task prompt.

CORTEXLINK_AGENT_CONTEXT="You are operating as a CortexLink agent. Your output is consumed directly by a control center. Execute the task, verify your own work (Execute → Verify → fix if needed → Report), then return ONLY this structured report — plain text labels, no bold, no headers:\nSTATUS: ✅ Verified / ⚠️ Partial / ❌ Failed\nSUMMARY: <1-2 sentences>\nSTEPS:\n  - <step>\nFILES: <changed files or none>\nISSUES: <notes or none>\nMax 150 words. Never mark ✅ without actually checking. For analysis tasks, ✅ = completed the analysis even if you cannot run the code."

Read-only delegation (question, analysis):

claude -p "[delegation prompt]" --output-format text \
  --cwd $(git rev-parse --show-toplevel) \
  --allowedTools "Read" --model claude-haiku-4-5 \
  --no-session-persistence --max-turns 3 \
  --append-system-prompt "$CORTEXLINK_AGENT_CONTEXT"

Write delegation (fix, implement):

claude -p "[delegation prompt]" --output-format text \
  --cwd $(git rev-parse --show-toplevel) \
  --allowedTools "Read" "Edit" "Write" \
  --no-session-persistence \
  --append-system-prompt "$CORTEXLINK_AGENT_CONTEXT"

Write delegation + shell (runs commands):

claude -p "[delegation prompt]" --output-format text \
  --cwd $(git rev-parse --show-toplevel) \
  --allowedTools "Read" "Edit" "Write" "Bash(git *)" \
  --no-session-persistence \
  --append-system-prompt "$CORTEXLINK_AGENT_CONTEXT"

Planning / analysis only (no writes):

claude -p "[delegation prompt]" --output-format text \
  --cwd $(git rev-parse --show-toplevel) \
  --permission-mode plan --no-session-persistence --max-turns 5 \
  --append-system-prompt "$CORTEXLINK_AGENT_CONTEXT"

Piped input:

cat file.ts | claude -p "[delegation prompt]" --output-format text \
  --cwd $(git rev-parse --show-toplevel) \
  --allowedTools "Read" --no-session-persistence \
  --append-system-prompt "$CORTEXLINK_AGENT_CONTEXT"

Delegation Prompt

Follow the template from skills/orchestration/SKILL.md. Include the structured report format instructions at the end of every prompt.

Status semantics for analysis tasks:

• ✅ Verified = you read the code and completed the analysis — even if you cannot run it
• ⚠️ Partial = you could not access required files, or the diff was truncated
• ❌ Failed = the gh command failed or the diff was inaccessible

⛔ Do NOT use ⚠️ just because you cannot execute the code being reviewed. Static analysis that is complete = ✅.

Handling the Report

The agent's stdout is its report. Capture it directly:

REPORT=$(claude -p "[prompt]" --output-format text \
  --cwd $(git rev-parse --show-toplevel) \
  --allowedTools "Read" --no-session-persistence \
  --append-system-prompt "$CORTEXLINK_AGENT_CONTEXT" 2>/dev/null)

Read STATUS first. If ⚠️ or ❌, read ISSUES before deciding next action.

Key Differences from Copilot CLI

	Copilot CLI	Claude CLI
Tool permissions	--allow-tool='write, read'	--allowedTools "Read" "Edit"
Prevent questions	--no-ask-user	implied by -p
Working directory	cd $(git rev-parse --show-toplevel) &&	--cwd PATH
Model flag	--model=<model-id>	--model <model-id>

Error Handling

Failure	Action
Command not found	Tell user: npm install -g @anthropic-ai/claude-code
Auth failure	Tell user: claude auth login then re-run /cortexlink:setup
Budget exceeded	Increase --max-budget-usd or handle natively
Unexpected output	Retry once. If still failing, handle natively.

Chaining

Pass the SUMMARY + STEPS excerpt from this agent's report as [Context] in the next delegation prompt. Do not pass raw output.