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Sqlite idempotent column migration

Skill kjuhwa/skills-hub/skills/python/sqlite-idempotent-column-migration

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npx -y skills add kjuhwa/skills-hub --skill sqlite-idempotent-column-migration

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Apply SQLite column-level schema migrations at every startup without Alembic, using existence checks plus table-rename for column removal.

SKILL.md

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SQLite idempotent column migration

When to use

You ship a single-user desktop or CLI app with a SQLite database. Every user has exactly one DB file. Alembic's rollback/team-coordination features don't apply and its alembic.ini + env.py + versions/ tree is annoying to bundle through PyInstaller.

Steps

  1. Write one run_migrations(engine) function called from app startup. Its job is idempotent: run on every launch, do nothing when the schema already matches.
  2. Inside, introspect current schema with SQLAlchemy's inspector: tables = set(inspector.get_table_names()), columns = {c["name"] for c in inspector.get_columns(table)}. Don't trust ORM metadata — read the live DB.
  3. For "add column" migrations: if "new_col" not in columns: ALTER TABLE t ADD COLUMN new_col TYPE DEFAULT .... Use _add_column(engine, table, "new_col TYPE DEFAULT x", "label") helper that logs when it fires.
  4. For "remove column" (SQLite can't DROP COLUMN on old versions): create t_new, INSERT INTO t_new SELECT ... with the reduced column set, DROP TABLE t, ALTER TABLE t_new RENAME TO t. Wrap in a single transaction. Re-read columns after the recreate because the inspector's cache is stale.
  5. For "change data shape" migrations (e.g. replace a position int with absolute start_time_ms): add the new column, populate it in a single pass over the old data, then remove the old column via rename.
  6. Order migrations deterministically by splitting per-table: _migrate_story_items, _migrate_profiles, … called in a fixed sequence from run_migrations. Each helper guards on table presence first.
  7. After column migrations, run data normalizations (path rebasing, UUID format fixes) inside the same startup pass so users never see half-migrated rows.

Counter / Caveats

  • Log only when real work happens — a silent startup on an already-migrated DB is the happy path, but a suddenly-noisy startup after an update is useful telemetry.
  • Never reorder the per-table migration calls across releases; an earlier migration may assume a later one hasn't run yet.
  • Column existence checks catch the common case but not "column has wrong type" — if you need to change a column type, go through the rename-rebuild pattern.
  • This approach hits its wall when you need coordinated multi-process migrations or rollback. At that point, graduate to Alembic.

Source references: backend/database/migrations.py (the whole file, including _migrate_story_items for the rename-rebuild pattern and _normalize_storage_paths for the data pass).

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