agentsclimarketplace

Openevidence upgrade migration

Skill jeremylongshore/claude-code-plugins-plus-skills/plugins/saas-packs/openevidence-pack/skills/openevidence-upgrade-migration

'Upgrade Migration for OpenEvidence.From its SKILL.md

Install
npx -y skills add jeremylongshore/claude-code-plugins-plus-skills --skill openevidence-upgrade-migration

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

What its file declares

Copied from the file, not written here

The file declares its own license as MIT. That is the author’s claim about this one file, and it is not the same thing as the license GitHub reports for the repository, which is listed with the other numbers below.

SKILL.md

5.9 KB, ~1.3k tokens by cl100k_base, as published. Nobody here has run it

OpenEvidence Upgrade & Migration

Overview

OpenEvidence is a clinical AI platform that provides evidence-based medical answers and clinical decision support. The API exposes endpoints for clinical queries, evidence retrieval, and citation management. Tracking API changes is critical because OpenEvidence evolves its evidence grading schema, citation format, and clinical query response structure — and breaking changes in a healthcare context can surface outdated medical evidence, alter confidence scores, or remove critical safety disclaimers that downstream clinical applications depend on.

Version Detection

const OPENEVIDENCE_BASE = "https://api.openevidence.com/v1";

async function detectOpenEvidenceVersion(apiKey: string): Promise<void> {
  const res = await fetch(`${OPENEVIDENCE_BASE}/status`, {
    headers: { Authorization: `Bearer ${apiKey}`, "Content-Type": "application/json" },
  });
  const version = res.headers.get("x-openevidence-api-version") ?? "v1";
  console.log(`OpenEvidence API version: ${version}`);

  // Test clinical query response schema
  const queryRes = await fetch(`${OPENEVIDENCE_BASE}/query`, {
    method: "POST",
    headers: { Authorization: `Bearer ${apiKey}`, "Content-Type": "application/json" },
    body: JSON.stringify({ question: "What is the recommended treatment for hypertension?", max_citations: 1 }),
  });
  const data = await queryRes.json();
  const hasStructuredCitations = data.citations?.[0]?.evidence_grade !== undefined;
  console.log(`Structured citations: ${hasStructuredCitations}`);
  const hasDisclaimers = data.disclaimers !== undefined;
  console.log(`Disclaimers field present: ${hasDisclaimers}`);
}

Migration Checklist

  • Review OpenEvidence release notes for API schema changes
  • Verify clinical query response structure (answer, citations, confidence)
  • Check evidence grading scale — letter grades vs. numeric scores may change
  • Validate citation format (PMID references, DOI links, journal metadata)
  • Test disclaimer and safety warning fields in query responses
  • Update clinical specialty filters if taxonomy was expanded
  • Check rate limits for clinical query endpoints (may differ by plan tier)
  • Verify streaming response format if using real-time query mode
  • Update evidence date range filters if temporal query syntax changed
  • Run clinical validation suite against known question-answer pairs

Schema Migration

// OpenEvidence query response: flat answer → structured evidence with grading
interface OldQueryResponse {
  answer: string;
  citations: Array<{ title: string; url: string; source: string }>;
  confidence: number;
}

interface NewQueryResponse {
  answer: { text: string; sections: Array<{ heading: string; content: string }> };
  citations: Array<{
    title: string;
    url: string;
    source: string;
    pmid?: string;
    doi?: string;
    evidence_grade: "A" | "B" | "C" | "D" | "expert_opinion";
    publication_year: number;
  }>;
  confidence: { score: number; level: "high" | "moderate" | "low"; basis: string };
  disclaimers: string[];
  query_metadata: { specialty: string; guidelines_version: string };
}

function migrateQueryResponse(old: OldQueryResponse): NewQueryResponse {
  return {
    answer: { text: old.answer, sections: [{ heading: "Summary", content: old.answer }] },
    citations: old.citations.map((c) => ({
      ...c,
      evidence_grade: "C" as const,
      publication_year: 0,
    })),
    confidence: { score: old.confidence, level: old.confidence > 0.7 ? "high" : "moderate", basis: "legacy" },
    disclaimers: ["This information is for educational purposes. Consult a healthcare provider."],
    query_metadata: { specialty: "general", guidelines_version: "unknown" },
  };
}

Rollback Strategy

class OpenEvidenceClient {
  private apiVersion: "v1" | "v2";

  constructor(private apiKey: string, version: "v1" | "v2" = "v2") {
    this.apiVersion = version;
  }

  async query(question: string, options?: { specialty?: string }): Promise<any> {
    try {
      const res = await fetch(`https://api.openevidence.com/${this.apiVersion}/query`, {
        method: "POST",
        headers: { Authorization: `Bearer ${this.apiKey}`, "Content-Type": "application/json" },
        body: JSON.stringify({ question, ...options }),
      });
      if (!res.ok) throw new Error(`OpenEvidence ${res.status}`);
      return await res.json();
    } catch (err) {
      if (this.apiVersion === "v2") {
        console.warn("Falling back to OpenEvidence API v1");
        this.apiVersion = "v1";
        return this.query(question, options);
      }
      throw err;
    }
  }
}

Error Handling

Migration IssueSymptomFix
Evidence grade scale changedGrade returns "level-1" instead of "A"Map new grade scale to internal representation using lookup table
Citation format restructuredMissing pmid field, now nested under identifiers.pmidUpdate citation parser for new nested identifier structure
Disclaimer field requiredIntegration missing safety warnings in user-facing outputAlways render disclaimers[] array from query response
Specialty taxonomy expanded400 with unknown specialty on filtered queriesFetch current specialties from /specialties endpoint
Streaming format changedSSE parser breaks on new event structureUpdate event stream parser for new data: payload format

Resources

Next Steps

For CI pipeline integration, see openevidence-ci-integration.

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

Keep looking

Skills are one crate of 326,144. Ordering is by how many stacks a row turns up in, so the top of any crate is what has actually been picked rather than what has the most stars.