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Asb metabolomics

Skill HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/asb-metabolomics

Use FIRST when working with the ASB Metabolomics skill collection. The meta-skill: it explains good practice (search -> apply -> ground), enforces the license-tier acknowledgment for non-open tools, then hands off to the _router skill for actual skill selection.From its SKILL.md

Install
npx -y skills add HolobiomicsLab/asb-skill-collections --skill asb-metabolomics

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

One thing to look at

  • 15 stars15 stars. Stars are a popularity signal and not a quality one, but at this level it is likely that nobody has read this closely except its author, and you would be relying on your own review.

What its file declares

Copied from the file, not written here

The file declares its own license as CC-BY-4.0. That is the author’s claim about this one file, and it is not the same thing as the license GitHub reports for the repository, which is listed with the other numbers below.

SKILL.md

2.0 KB, 392 tokens by cl100k_base, as published. Nobody here has run it

asb-metabolomics

The entry point for the ASB Metabolomics collection. Run this before routing to a specific skill.

Protocol: search -> apply -> ground

  1. Search for a skill via skills_index.json (EDAM IRI / tool / keyword) or tools_index.json.
  2. License-tier gate (governance). Read the candidate skill's metadata.tool_license.
    • If requires_ack: true (tier noncommercial): surface tier + ref + url to the user and obtain an explicit, blocking acknowledgment that their use is a permitted (noncommercial) purpose before applying the skill. Commercial use is forbidden without a separate license.
    • If tier is restricted (requires_ack: false): surface a non-blocking soft note — "no clear license detected — verify before commercial use or redistribution" — then continue without waiting for acknowledgment. Default discovery to open-tier skills; flag non-open results.
  3. Apply the selected skill.
  4. Ground against the source via the Perspicacité binder. Grounding for non-open tiers is link-only (referenced, never embedded); assembling a local bundle is the consumer's responsibility.

Hand-off

For the actual skill selection, delegate to the _router skill, which performs pure routing over the indexes. This meta-skill owns guidance and license governance; _router owns routing.

License tiers

open = commercial use OK; noncommercial = academic/noncommercial only; restricted = no grant / proprietary. See governance/LICENSE_TIERS.md. This axis is separate from the paper open-access axis (access.type).

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

Keep looking

Skills are one crate of 325,949. Ordering is by how many stacks a row turns up in, so the top of any crate is what has actually been picked rather than what has the most stars.