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Neural network model layer validation

Skill HolobiomicsLab/asb-skill-collections/collections/metabolomics/v2/skills/neural-network-model-layer-validation

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npx -y skills add HolobiomicsLab/asb-skill-collections --skill neural-network-model-layer-validation

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Use when after converting Keras models to HDF5 TensorFlow 2.0 format and before deploying them to a TensorFlow Serving endpoint.

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SKILL.md

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neural-network-model-layer-validation

Summary

Validates that converted neural network models conform to required layer naming conventions and format specifications before deployment. This skill ensures HDF5 TensorFlow 2.0+ models have correctly named input and output layers for compatibility with downstream inference systems like TensorFlow Serving.

When to use

After converting Keras models to HDF5 TensorFlow 2.0 format and before deploying them to a TensorFlow Serving endpoint. Apply this skill when you need to verify that model architecture changes or conversions have preserved the expected layer interface, particularly when multiple models (2048 and 4096-dimensional variants) must be distinguished and routed correctly.

When NOT to use

  • Model has not yet been converted to HDF5 format; convert first using Keras conversion utilities.
  • You are working with Keras native format (.keras) models intended for TensorFlow 2.11+; layer naming conventions may differ.
  • Model is already deployed and in production; use this skill during staging, not to interrupt running services.

Inputs

  • Converted HDF5 TensorFlow 2.0+ model file (.h5)
  • Model architecture specification (expected input/output layer names)
  • TensorFlow Serving metadata endpoint (optional, for remote validation)

Outputs

  • Validation report (layer names, format, compatibility status)
  • Pass/fail determination for deployment readiness
  • Model metadata JSON (from TensorFlow Serving /model/metadata if validated)

How to apply

Load the converted HDF5 model and inspect its layer structure to confirm input layers are named exactly 'input_2048' and 'input_4096', and the output layer is named 'output'. Check the model metadata via TensorFlow Serving's /model/metadata endpoint or programmatically using Keras model inspection functions. Validate the model is serialized in HDF5 format (.h5 extension) and not in Keras native format. If layer names do not match the expected convention, the downstream classification API will fail to route SMILES inputs correctly. Document any discrepancies and halt deployment until corrected.

Related tools

  • TensorFlow (Model inspection, layer metadata retrieval, HDF5 format validation)
  • Keras (Model loading and layer name inspection via model.layers API)
  • TensorFlow Serving (Remote validation of model metadata and layer interface via /model/metadata endpoint)
  • Python (Scripting layer validation logic and model introspection)

Examples

import tensorflow as tf; model = tf.keras.models.load_model('classifier_model.h5'); print([layer.name for layer in model.layers if 'input' in layer.name or 'output' in layer.name])

Evaluation signals

  • Model loads without errors in TensorFlow and contains exactly two input layers named 'input_2048' and 'input_4096'.
  • Model contains exactly one output layer named 'output' with the expected shape and dtype.
  • File is confirmed to be in HDF5 format (not Keras native format) using h5py or similar inspection tool.
  • TensorFlow Serving /model/metadata endpoint returns model signature with input/output names matching the expected convention.
  • Classification API successfully routes SMILES queries to the model without 'input layer not found' or shape mismatch errors.

Limitations

  • Validation requires TensorFlow 2.3.0 or compatible version; later TensorFlow versions may use different model formats or layer naming conventions.
  • Layer name validation alone does not verify model weights, architecture correctness, or numerical output validity; functional testing required separately.
  • If model input/output names were changed in code after model conversion, this skill detects the mismatch but does not automatically correct it.
  • Remote validation via TensorFlow Serving assumes the endpoint is accessible and configured; local validation is more reliable for CI/CD pipelines.

Evidence

  • [readme] Input layers' names should be "input_2048" and "input_4096"

Output layer's name should be "output": "Input layers' names should be "input_2048" and "input_4096"

Output layer's name should be "output""

  • [other] Validate the converted models are in HDF5 format and contain the correct layer naming convention for TensorFlow Serving compatibility.: "Validate the converted models are in HDF5 format and contain the correct layer naming convention for TensorFlow Serving compatibility."
  • [readme] If the model input names change, then we need to change it in the code: "If the model input names change, then we need to change it in the code"
  • [other] Convert the downloaded Keras models to HDF5 TensorFlow 2.0+ format using Keras model conversion utilities: "Convert the downloaded Keras models to HDF5 TensorFlow 2.0+ format using Keras model conversion utilities"

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