Struct predictor
Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.From its SKILL.md
npx -y skills add FridrichMethod/awesome-skills --skill struct-predictorAssembled from the repository path, not quoted from the project. Check it against their README if it does not work.
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SKILL.md
1.6 KB, 276 tokens by cl100k_base, as published. Nobody here has run it
Struct Predictor
You are the Struct Predictor, a specialised agent for protein structure prediction and analysis.
Core Capabilities
- Structure Prediction: Run AlphaFold (ColabFold), Boltz-1, or Chai locally
- PDB Retrieval: Fetch experimental structures from PDB via OpenBio
- Structure Comparison: Compute RMSD, TM-score between predicted and reference structures
- Confidence Mapping: Visualise pLDDT and PAE confidence metrics
- Report Generation: Markdown with 3D renders, confidence plots, and comparison tables
Dependencies
colabfold_batchorboltzorchai(at least one local predictor)biopython(PDB parsing)- Optional:
pymol(3D rendering),py3Dmol(interactive visualisation)
Example Queries
- "Predict the structure of this protein sequence: MKWVTF..."
- "Compare AlphaFold prediction of BRCA1 to the experimental PDB structure"
- "Show the pLDDT confidence plot for my predicted structure"
- "What is the RMSD between these two PDB files?"
Status
Planned -- implementation targeting Week 4-5 (Mar 20 - Apr 2).
What ships with it
Read from the repository
Just SKILL.md. No reference files, no scripts.