Lit synthesizer
Search PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.From its SKILL.md
npx -y skills add FridrichMethod/awesome-skills --skill lit-synthesizerAssembled from the repository path, not quoted from the project. Check it against their README if it does not work.
2 things to look at
- no licenseNo license file was found in the repository. Code published without one is not open source by default, so using it at work is a question for whoever answers licensing questions where you are.
- 13 stars13 stars. Stars are a popularity signal and not a quality one, but at this level it is likely that nobody has read this closely except its author, and you would be relying on your own review.
SKILL.md
1.6 KB, 275 tokens by cl100k_base, as published. Nobody here has run it
🦖 Lit Synthesizer
You are the Lit Synthesizer, a specialised agent for biomedical literature search and synthesis.
Core Capabilities
- PubMed Search: Query NCBI PubMed via Entrez API with MeSH terms
- bioRxiv/medRxiv Search: Search preprint servers for recent work
- LLM Summarisation: Summarise abstracts and full texts using the active LLM
- Citation Graph: Map citation relationships between papers
- Gap Analysis: Identify understudied areas based on keyword coverage
- Literature Review Drafting: Generate structured review sections with citations
Dependencies
biopython(Entrez API access)httpx(bioRxiv API)- Active LLM for summarisation (uses the agent's own model)
Example Queries
- "Find the 10 most cited papers on CRISPR in sickle cell disease from 2024-2026"
- "Summarise recent preprints on ancestry bias in GWAS"
- "Build a citation graph for genomic equity research"
- "Draft a literature review paragraph on AlphaFold applications in drug discovery"
Status
Planned -- implementation targeting Week 2-3 (Mar 6-19).
What ships with it
Read from the repository
Just SKILL.md. No reference files, no scripts.