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Biomni general agent

Skill FridrichMethod/awesome-skills/skills/biomni-general-agent

Use the local Biomni checkout to orchestrate its 150+ biomedical tools, databases, and know-how workflows for complex research questions.From its SKILL.md

Install
npx -y skills add FridrichMethod/awesome-skills --skill biomni-general-agent

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

2 things to look at

  • no licenseNo license file was found in the repository. Code published without one is not open source by default, so using it at work is a question for whoever answers licensing questions where you are.
  • 13 stars13 stars. Stars are a popularity signal and not a quality one, but at this level it is likely that nobody has read this closely except its author, and you would be relying on your own review.

SKILL.md

1.8 KB, 395 tokens by cl100k_base, as published. Nobody here has run it

<!-- # COPYRIGHT NOTICE # This file is part of the "Universal Biomedical Skills" project. # Copyright (c) 2026 MD BABU MIA, PhD <[email protected]> # All Rights Reserved. # # This code is proprietary and confidential. # Unauthorized copying of this file, via any medium is strictly prohibited. # # Provenance: Authenticated by MD BABU MIA -->

At-a-Glance

  • description (10-20 chars): Omni bio agent
  • keywords: multi-tool, know-how, tutorials, protocols, databases
  • measurable_outcome: Execute a Biomni workflow that touches ≥2 tool categories and returns a cited research summary or artifact within 15 minutes per request.

Workflow

  1. Environment: cd repo && pip install . (or follow tutorials env set up). Activate the environment with required GPUs if using heavy models.
  2. Select mode: Choose Standard (full stack), Light (API-only), or Commercial (license-safe) per task.
  3. Plan tools: Query the Know-How library for relevant protocols/databases before executing.
  4. Execute notebooks/scripts: Use repo/tutorials or CLI entrypoints to run pipelines; log tool versions.
  5. Summarize: Provide outputs + citations pulled from the Know-How metadata.

Guardrails

  • Respect tool/data licenses when selecting Light vs Commercial mode.
  • Track provenance (tool versions, dataset snapshots) in final response.
  • Keep workflows modular—reuse Biomni recipes rather than ad-hoc scripts when possible.

References

  • Full capability list, tool inventory, and tutorial notebooks documented in README.md and repo/tutorials/.
<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->

What ships with it: 147 files

2829.1 KB alongside SKILL.md, 81 of them executable

repo/

107 more files not listed here. See all 147 in the repository.

Keep looking

Skills are one crate of 326,499. Ordering is by how many stacks a row turns up in, so the top of any crate is what has actually been picked rather than what has the most stars.