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Compile latex

Skill ericluo04/claude-academic-workflow/skills/compile-latex

Academic research workflow for Claude Code: 14 skills (paper reading, lit review, bib auditing, preregistration, referee reports, replication packages, LaTeX, TikZ) plus a Quarto reveal.js slide system with render-time quality gates. Entirely AI-generated with Claude Code as a proof of concept.

Install
npx -y skills add ericluo04/claude-academic-workflow --skill compile-latex

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What its author says it does

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Compile a .tex with latexmk, auto-detecting the engine (pdflatex/xelatex/lualatex) and bib backend (biber/bibtex), then emit a ranked error report with accurate file:line attribution across \input'd files, plus a diff against the last compile. Guards against Dropbox conflicted-copy files in Overleaf projects. TRIGGER on "compile this", "build my paper", "build the beamer deck", "why won't this compile", "what are the latex errors", "did my edit add warnings", or any request to build or debug a LaTeX document; Quarto .qmd decks belong to research-talk and teaching-lecture. An opt-in --figures pass hands TikZ/pgfplots blocks to the tikz-iterate skill.

SKILL.md

9.7 KB, as published. Nobody here has run it

compile-latex

Compile a .tex, parse the log into a ranked report with correct file:line attribution, and diff it against the previous build. The default is compile-and-report only; nothing in the source is edited unless --figures is passed.

Parsing detail (package tables, log regexes, file-stack rules, box thresholds, state schema) is in references/log-patterns.md. Read it before steps 3 through 5. Diff-vs-last-compile is adapted from compiledeck in scunning1975/MixtapeTools.

Options

OptionDefaultMeaning
positional pathrequiredMaster .tex. Absolute path, or a basename to resolve.
--engine=autoForce pdflatex / xelatex / lualatex.
--outdir=buildAux directory (latexmk -outdir).
--box-threshold=5ptOverfull reporting gate.
--figuresoffOpt-in: polish TikZ/pgfplots figures via tikz-iterate, then splice back.
--no-biboffSkip the bib run (-bibtex-).
--forceoffCompile even if a conflicted copy is present.
--clean / --clean-allofflatexmk -c / -C, then stop.

Resolving the file

No config file. In order: use an absolute or cwd-relative path if given; otherwise Glob ~/Library/CloudStorage/Dropbox*/Apps/Overleaf/*/**/<name>.tex and, if a project name was mentioned, filter to that project directory; otherwise Glob *.tex in the cwd and pick the one with \documentclass. Ask only if that leaves zero or several plausible masters.

Step 0, pre-flight

  1. Read the master.
  2. Conflicted-copy guard. This setup assumes these projects sync through Dropbox (adjust to your machine), so compiling next to a stale sibling means reporting errors the user already fixed elsewhere. Glob the project directory recursively for *conflicted copy* (.tex, .bib, .sty, .cls). If any exist, stop and list them with mtimes so the user can resolve the conflict. --force overrides.
  3. --clean / --clean-all: run latexmk -c -outdir=<outdir> <file> or latexmk -C -outdir=<outdir> <file> and stop.
  4. latexmk is at /Library/TeX/texbin/latexmk on a MacTeX install. If it is missing from PATH, prepend /Library/TeX/texbin before failing with SETUP_MISSING:latexmk. With --figures, also check gs (e.g. /usr/local/bin/gs); if absent, report SETUP_MISSING:gs and skip the figure pass, keeping the compile report.

Step 1, detect engine and bib backend

Read the preamble plus any \input'd preamble file (§6 of the reference). A % !TEX program = magic comment wins. Otherwise fontspec / unicode-math / \setmainfont / xeCJK / ctex implies xelatex; \directlua / luacode implies lualatex; else pdflatex. --engine= overrides both.

Bib backend, unless --no-bib: biblatex or \addbibresource means biber; natbib plus \bibliographystyle means bibtex. Warn on a mismatch (biblatex loaded with a leftover \bibliographystyle, or \addbibresource with no biblatex).

Print the detection before compiling:

File:   <path>
Engine: xelatex  (\setmainfont in preamble)
Bib:    biber    (\addbibresource)
Outdir: build/

Step 2, compile

latexmk -f "$ENGINE_FLAG" -interaction=nonstopmode -synctex=1 -outdir=<outdir> <file>

ENGINE_FLAG comes from the step-1 detection: -pdf (pdflatex), -pdfxe (xelatex), -pdflua (lualatex). -f matters: without it latexmk stops at the first failing pass, so the log holds one error instead of all of them. Never pass -halt-on-error. Add -bibtex- for --no-bib. A nonzero exit code is expected on a failed document and is not a tooling failure; parse the log regardless.

Step 3, parse the log

Read <outdir>/<jobname>.log and run the file-stack tracker from §3 so every file:line lands on the right \input'd sub-file rather than the master. The tracker must push a placeholder for non-path ( as well, otherwise the parens inside ordinary messages (Overfull \hbox (15.83003pt too wide)) pop real files off the stack and every subsequent attribution is wrong.

Extract blocking errors (! ... plus the following l.<N>), undefined refs/cites (§4), and boxes (§5).

Step 4, rank and report

Lead with one verdict line, BUILD OK / BUILD OK (with warnings) / BUILD FAILED (N blocking), and the PDF path. Then, in this fixed order:

  1. Blocking errors. <file>:<line> plus the ! ... message. For Undefined control sequence, look the token up in §1 and suggest the \usepackage. For Environment X undefined, use the environment table in §1. For a missing .sty, print the tlmgr line from §2 for the user to run (MacTeX's tree is root-owned, so it needs sudo; never run it unprompted). Collapse cascades per §1: one undefined environment produces two or three downstream errors that vanish once the root cause is fixed.
  2. Undefined refs and cites, split into two lists, keys with input lines. Only report what survives the final pass (§4).
  3. Boxes, gated: overfull above --box-threshold, underfull at badness >= 5000. Worst 10 sorted by severity, then +K more.

Below-threshold and font/rerun-check noise is dropped silently.

Step 5, diff vs last compile

State lives at ~/.claude/state/compile-latex/<hash>/last.json, where <hash> is sha1(abspath)[:12]. Load it, diff the new ref/cite/box sets, and report deltas (+2 overfull, -1 undefined ref since last compile). Box identity is file:lines:kind, not the pt value, so a reflow of the same box is not counted as new. Write the new state atomically (tmp file plus rename); the Write tool creates missing parent directories, but a Bash-side write needs a mkdir -p first, since ~/.claude/state/ may not exist yet. With no baseline, note first compile (no baseline) and just write. Schema in §8.

Step 6, figures (opt-in, --figures only)

Runs only under --figures, and only when the build was clean and figures exist.

  1. Grep the master and its \input'd files for \begin{tikzpicture} and pgfplots \begin{axis} / \begin{groupplot} blocks (§7). Treat the outermost tikzpicture as the unit.
  2. For each block, record the file, the exact body text, and sha1(body). Harvest the parent preamble's \usepackage / \usetikzlibrary / \usepgfplotslibrary / \pgfplotsset / \definecolor / \colorlet / \newcommand / \def / \tikzset lines into a standalone wrapper so colors and macros resolve.
  3. Hand each wrapped figure to the tikz-iterate skill (one subagent per figure, run concurrently), with a goal derived from the caption if there is one. Do not reimplement its refine loop here.
  4. Splice back only on a verified anchor. Re-Read the source file, confirm the captured body still appears exactly once and its sha1 is unchanged, then Edit with that body as old_string. If it is missing, appears more than once, or the hash moved, skip it and report not spliced (source changed). Strip the wrapper first; keep the surrounding figure env, \caption, \label, \centering, and any \resizebox / \adjustbox.
  5. Recompile once and report which blocks changed.

Rasterization belongs to tikz-iterate, which uses ghostscript (this setup assumes no poppler is installed; adjust to your machine); leave it there. To inspect the compiled document's text, run ~/.claude/assets/bin/pdfread.py text <outdir>/<jobname>.pdf. On a machine without poppler, the Read tool cannot open a PDF (no pdftoppm), and pdftotext does not exist either, so never shell out to those.

Step 7, cleanup

Aux files stay in <outdir>/. Mention --clean / --clean-all as the way to wipe them; leave the PDF. For a live rebuild loop tell the user to run latexmk -pvc -outdir=<outdir> <file> themselves.

Failure modes

SymptomCauseResponse
Conflicted-copy siblingDropbox sync conflictStop in step 0, list files, offer --force.
! ... .sty not foundPackage absentCheck kpsewhich <file>, then print the tlmgr line (§2).
Undefined control sequenceMissing package or user macro§1 lookup; if it is a project macro, flag a missing \newcommand or an un-\input'd macro file.
Refs undefined, log says Rerun to get cross-references rightlatexmk did not convergeRe-run once; do not report the refs (§4).
Stack depth goes negativeUnbalanced parens in log textReset to master, mark the attribution ~approx.
Empty or absent .loglatexmk never startedReport the raw latexmk stderr; do not invent errors.
Figure will not convergeHard diagramLeave that block unspliced, report it, continue.

Examples

compile-latex main.tex
→ BUILD FAILED (1 blocking)
  sections/results.tex:212  Undefined control sequence \toprule
    fix: \usepackage{booktabs}
→ 1 undefined cite: Smith2020
→ since last compile: +0 boxes
compile-latex "Algorithmic Pricing Manuscript" --box-threshold=2pt
→ BUILD OK (with warnings) | build/main.pdf
→ 3 overfull >2pt (worst: sections/model.tex:88, 18.4pt) | +1 since last compile

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