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Figure table audit

Skill brycewang-stanford/Auto-Empirical-Research-Skills/skills/54-scdenney-open-science-skills/skills/figure-table-audit

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Install
npx -y skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill figure-table-audit

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Audit figures, tables, captions, cross-references, and statistical notes.

SKILL.md

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Figure and Table Auditor

Heritage and scope

This is an original Open Science Skills workflow for manuscript QA. It remixes general figure/table and citation-compliance ideas from Cheng-I Wu's Academic Research Skills for Claude Code (CC BY-NC 4.0), but is rewritten for open-science social-science manuscripts. It is not a visual hallucination engine: when a claim requires reading plotted values from an image, prefer source data or mark the issue as needing author verification.

This is the end-stage auditor. For figure design and production guidance during drafting, use the figures skill; for table design, use the tables skill. Run figure-table-audit once the figure and table set is stable and you are preparing for submission.

Instructions

1. Orient before auditing

Identify:

  • Manuscript source and compiled output, if any.
  • Figure directory, table files, appendix/SI files, and build command.
  • Target journal or style guide.
  • Whether figures are generated from code, manually edited, or exported from software.
  • Whether source data for figures/tables are available.

If only a PDF is available, state that cross-reference and value checks are lower confidence.

2. Inventory figures and tables

Build an inventory with:

  • Figure/table number or label.
  • File path or source location.
  • Caption/title.
  • First in-text callout.
  • Appendix/SI location if applicable.
  • Producing script or data source, if visible.

Check:

  • Every in-text callout resolves to an existing figure/table.
  • Every figure/table is called out in text before or near appearance.
  • Numbering is gap-free and not duplicated.
  • Main-text and SI labels do not collide.
  • LaTeX/Markdown references compile without unresolved labels.

3. Check text-to-evidence consistency

For each figure/table used to support a substantive claim:

  • Match the in-text claim to the exact row, column, panel, model, or plotted quantity.
  • Verify direction, magnitude, uncertainty, subgroup, and denominator.
  • Check whether text overstates non-significant or imprecise estimates.
  • Check whether figure/table notes disclose model specification, N, weights, fixed effects, clustering, and missing-data handling.
  • For experimental papers, check ITT vs per-protocol labeling, attrition-by-arm, baseline balance, and CONSORT/sample-flow consistency.

Do not infer exact values by eyeballing a plot unless the figure encodes labeled values. If source data are unavailable, write VISUAL READ ONLY - AUTHOR VERIFY.

4. Audit captions and notes

Captions and table notes should let a reader understand the evidence without hunting:

  • Figure caption states what is plotted, units, sample, uncertainty interval, and panel meanings.
  • Table title states the estimand or model family, not only "Results."
  • Table notes define dependent variable, treatment/condition coding, omitted categories, controls, fixed effects, clustering, weights, and significance markers.
  • All abbreviations are defined on first use.
  • All transformations, scales, and index directions are explicit.
  • Any data exclusions or subgroup restrictions are named.

For conjoint, list-experiment, topic-modeling, LLM-classification, and OCR studies, invoke or recommend the relevant sibling skill when table/figure interpretation depends on method-specific standards.

5. Check accessibility and production quality

Flag:

  • Color palettes not interpretable in grayscale or by color-blind readers.
  • Low-resolution or rasterized text in vector outputs.
  • Axis labels too small or missing units.
  • Legends that obscure data or use ambiguous labels.
  • Inconsistent decimal precision.
  • Overcrowded tables that should move to SI.
  • Missing alt text when the target venue requires it.
  • Non-reproducible manual edits that are not documented.

6. Audit SI and replication linkage

Check whether:

  • Main-text claims that point to SI land on the correct appendix/table/figure.
  • SI numbering and captions are internally consistent.
  • Each main figure/table can be traced to a script or documented manual step.
  • Replication README maps outputs to scripts and data files.
  • Figure/table source data are archived or clearly restricted.

Output

Produce a Figure and Table Audit Report:

# Figure and Table Audit Report

Scope:
Inputs checked:
Build/source status:
Summary: <N blocking, N recommended, N minor, N author-verification>

## Inventory
| ID | Path/location | Caption/title | First callout | Source/script |

## Blocking Issues
| Location | Figure/table | Issue | Evidence | Fix |

## Recommended Fixes
| Location | Figure/table | Issue | Fix |

## Minor / Production Issues
| Figure/table | Issue | Fix |

## Author Verification Needed
| Figure/table | Why verification is needed |

## Readiness Checklist
| Dimension | PASS/FAIL/PARTIAL/NA | Notes |

Severity:

  • Blocking: missing figure/table, wrong referenced value, denominator mismatch, unresolved label, table contradicts text, missing sample-flow evidence for experimental paper, or non-reproducible main result output.
  • Recommended: incomplete notes, unclear captions, missing units, missing source script, accessibility problem, imprecise uncertainty reporting.
  • Minor: style, spacing, decimal precision, typography, cosmetic consistency.

Quality checks

  • Figure/table inventory was built before findings were listed.
  • Every substantive text-to-table finding names the row/column/panel/model checked.
  • Visual-only readings are flagged for author verification unless exact values are labeled.
  • Captions and notes were checked for sample, units, uncertainty, and model details.
  • SI and replication links were checked when files were available.
  • Method-specific figures/tables triggered the relevant sibling skill when needed.

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