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Inaturalist api

Skill brycewang-stanford/Auto-Empirical-Research-Skills/skills/43-wentorai-research-plugins/skills/domains/ecology/inaturalist-api

Citizen science platform API for biodiversity observationsFrom its SKILL.md

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iNaturalist API Guide

Overview

iNaturalist is a citizen science platform and social network for naturalists, jointly operated by the California Academy of Sciences and the National Geographic Society. The platform enables users to record and share observations of organisms in nature, which are then identified by the community and validated by computer vision models. With over 150 million observations of more than 400,000 species, iNaturalist is one of the largest biodiversity data sources in the world.

The iNaturalist API provides programmatic access to this massive observational dataset. Researchers can query observations by taxonomy, geography, time period, observer, and data quality grade. The API also provides access to taxonomic information, place boundaries, and project data. Research-grade observations (those with community-verified identifications) are automatically shared with GBIF for integration into the global biodiversity data infrastructure.

Ecologists, conservation biologists, evolutionary biologists, and citizen science coordinators use the iNaturalist API to analyze species distributions, track phenological patterns, study urban biodiversity, monitor invasive species, and validate species distribution models. The platform's broad geographic and taxonomic coverage makes it particularly valuable for large-scale ecological analyses.

Authentication

No authentication is required for read-only access to public data. The iNaturalist API v1 allows anonymous queries for observations, taxa, and places. Authentication via OAuth 2.0 is only needed for write operations such as creating observations, adding identifications, or managing projects.

For authenticated requests, register an application at https://www.inaturalist.org/oauth/applications and use the OAuth 2.0 flow to obtain an access token.

Core Endpoints

observations: Search Biodiversity Observations

Query the iNaturalist observation database with filters for taxonomy, geography, time, and data quality.

  • URL: GET https://api.inaturalist.org/v1/observations
  • Parameters:
ParameterTypeRequiredDescription
taxon_idintNoiNaturalist taxon ID to filter by
place_idintNoPlace ID to filter by geographic area
latfloatNoLatitude for geographic search
lngfloatNoLongitude for geographic search
radiusintNoSearch radius in km (used with lat/lng)
d1stringNoStart date (YYYY-MM-DD)
d2stringNoEnd date (YYYY-MM-DD)
quality_gradestringNoresearch, needs_id, or casual
per_pageintNoResults per page (default 30, max 200)
pageintNoPage number
order_bystringNoSort field: created_at, observed_on, votes
  • Example:
curl "https://api.inaturalist.org/v1/observations?taxon_id=3&quality_grade=research&place_id=1&per_page=10"
  • Response: Returns total_results, results array with id, species_guess, taxon (name, rank, ancestry), location (lat,lng), observed_on, quality_grade, photos, user, identifications_count, and geojson.

taxa: Taxonomic Information

Look up taxonomic information, search for species, and retrieve taxonomic hierarchies.

  • URL: GET https://api.inaturalist.org/v1/taxa
  • Parameters:
ParameterTypeRequiredDescription
qstringNoName search query
taxon_idintNoSpecific taxon ID
rankstringNoFilter by rank: species, genus, etc.
is_activeboolNoFilter for active/inactive taxa
per_pageintNoResults per page (default 30, max 200)
  • Example:
curl "https://api.inaturalist.org/v1/taxa?q=monarch+butterfly&rank=species"
  • Response: Returns results array with id, name, preferred_common_name, rank, observations_count, ancestors, default_photo, wikipedia_url, and conservation_status.

places: Geographic Place Boundaries

Retrieve geographic place definitions used for filtering observations.

  • URL: GET https://api.inaturalist.org/v1/places
  • Parameters:
ParameterTypeRequiredDescription
qstringNoPlace name search query
per_pageintNoResults per page
  • Example:
curl "https://api.inaturalist.org/v1/places/autocomplete?q=Yellowstone"
  • Response: Returns results with id, name, display_name, bounding_box_geojson, location, and admin_level.

Rate Limits

The iNaturalist API enforces a rate limit of 100 requests per minute. Exceeding this limit returns HTTP 429 responses. For large-scale data exports, iNaturalist recommends using their export tools at https://www.inaturalist.org/observations/export or downloading the GBIF-shared dataset. The API also supports If-Modified-Since headers for efficient polling of updated records.

Common Patterns

Species Distribution Analysis

Retrieve research-grade observations of a species for distribution modeling:

import requests

params = {
    "taxon_id": 48484,  # Danaus plexippus (Monarch Butterfly)
    "quality_grade": "research",
    "per_page": 200,
    "order_by": "observed_on"
}

resp = requests.get("https://api.inaturalist.org/v1/observations", params=params)
data = resp.json()

for obs in data["results"]:
    if obs.get("location"):
        lat, lng = obs["location"].split(",")
        print(f"{obs['observed_on']}: ({lat}, {lng}) - {obs['taxon']['name']}")

Phenology Tracking

Monitor seasonal patterns by analyzing observation dates across years:

import requests
from collections import Counter

params = {
    "taxon_id": 48484,
    "quality_grade": "research",
    "per_page": 200,
    "place_id": 1  # United States
}

resp = requests.get("https://api.inaturalist.org/v1/observations", params=params)
months = Counter()

for obs in resp.json()["results"]:
    if obs.get("observed_on"):
        month = obs["observed_on"][5:7]
        months[month] += 1

for month in sorted(months):
    print(f"Month {month}: {months[month]} observations")

Invasive Species Monitoring

Track observations of invasive species in a specific region:

# Search for Spotted Lanternfly observations in Pennsylvania
curl "https://api.inaturalist.org/v1/observations?taxon_id=325295&place_id=46&quality_grade=research&per_page=50"

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