Ddinter database
Skill BioTender-max/awesome-bio-agent-skills/skills/sciagent/ddinter-database
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
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Query DDInter drug-drug interactions via REST API (1.7M+ interactions, 2,400+ drugs). Search by drug name/ID for severity (major/moderate/minor), mechanisms, and clinical recommendations. No auth. For FDA labeling use dailymed-database; for pharmacogenomics use clinpgx-database.
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DDInter Drug-Drug Interaction Database
Overview
DDInter is an open, curated database of drug-drug interactions (DDIs) covering 2,400+ drugs and 1.7M+ pairwise interactions with structured severity levels (major, moderate, minor), mechanistic annotations, and clinical management recommendations. Access is provided via a JSON REST API at https://ddinter.scbdd.com/api/ — no authentication or registration required.
When to Use
- Checking whether two co-administered drugs have a known interaction and its severity (major/moderate/minor)
- Retrieving all known interactions for a given drug to support polypharmacy risk assessment
- Identifying the mechanistic basis (pharmacokinetic vs. pharmacodynamic) of a drug-drug interaction
- Screening a drug combination list for potential major interactions before clinical decision support
- Building automated DDI checking pipelines for medication review or drug repurposing workflows
- Analyzing the DDI network for a drug class (e.g., all major interactions for CYP3A4 substrates)
- For FDA-approved drug labeling text (indications, dosage, contraindications) use
dailymed-database - For pharmacogenomics interactions (CYP genotype-drug associations) use
clinpgx-database; DDInter covers drug-drug not gene-drug pairs - For drug adverse event reports from FAERS use
fda-database
Prerequisites
- Python packages:
requests,pandas,matplotlib,networkx - Data requirements: drug names or DDInter drug IDs
- Environment: internet connection; no API key required
- Rate limits: no officially published rate limit; use
time.sleep(0.3)between requests in batch loops for polite access
pip install requests pandas matplotlib networkx
Quick Start
import requests
BASE = "https://ddinter.scbdd.com/api"
# Search for a drug by name
r = requests.get(f"{BASE}/drug/", params={"drug_name": "warfarin", "format": "json"}, timeout=15)
r.raise_for_status()
data = r.json()
print(f"Results for 'warfarin': {data['count']} drugs found")
for drug in data["results"][:3]:
print(f" ID={drug['ddinter_id']} Name={drug['drug_name']}")
# Results for 'warfarin': 1 drugs found
# ID=DDInter_D00001 Name=Warfarin
Core API
Query 1: Search Drug by Name
Find a drug's DDInter ID by searching its name. The DDInter ID is required for all interaction queries.
import requests
import pandas as pd
BASE = "https://ddinter.scbdd.com/api"
def search_drug(drug_name):
"""Search DDInter for a drug by name. Returns list of matching drug records."""
r = requests.get(f"{BASE}/drug/",
params={"drug_name": drug_name, "format": "json"},
timeout=15)
r.raise_for_status()
return r.json()
# Search for warfarin
result = search_drug("warfarin")
print(f"Matches: {result['count']}")
if result["results"]:
drug = result["results"][0]
print(f"DDInter ID: {drug['ddinter_id']}")
print(f"Drug name: {drug['drug_name']}")
# Store DDInter ID for interaction queries
warfarin_id = drug["ddinter_id"]
print(f"\nWarfarin DDInter ID: {warfarin_id}")
# Batch name lookup
drugs_to_find = ["warfarin", "aspirin", "atorvastatin", "metformin", "amiodarone"]
id_map = {}
for name in drugs_to_find:
res = search_drug(name)
if res["results"]:
id_map[name] = res["results"][0]["ddinter_id"]
print(f" {name:20s} → {res['results'][0]['ddinter_id']}")
Query 2: Get All Interactions for a Drug
Retrieve all known DDIs for a drug by its DDInter ID. Returns interaction partners, severity, and clinical information.
import requests
import pandas as pd
BASE = "https://ddinter.scbdd.com/api"
def get_drug_interactions(drug_id, page_size=100):
"""Get all DDIs for a drug by DDInter ID. Handles pagination automatically."""
all_interactions = []
url = f"{BASE}/interaction/"
params = {"drug_id": drug_id, "format": "json", "page_size": page_size}
while url:
r = requests.get(url, params=params, timeout=20)
r.raise_for_status()
data = r.json()
all_interactions.extend(data.get("results", []))
url = data.get("next") # None when last page
params = {} # next URL already includes params
return all_interactions
# Get all interactions for warfarin (DDInter_D00001)
interactions = get_drug_interactions("DDInter_D00001")
print(f"Warfarin total interactions: {len(interactions)}")
# Summarize by severity
df = pd.DataFrame(interactions)
if not df.empty and "level" in df.columns:
severity_counts = df["level"].value_counts()
print("\nInteractions by severity:")
for level, count in severity_counts.items():
print(f" {level:15s}: {count:4d}")
# Major: 45
# Moderate: 312
# Minor: 198
Query 3: Get Interaction Details by Interaction ID
Retrieve full details for a specific drug-drug interaction, including mechanism and clinical recommendation.
import requests
BASE = "https://ddinter.scbdd.com/api"
def get_interaction_detail(interaction_id):
"""Get full details for a specific interaction by its DDInter interaction ID."""
r = requests.get(f"{BASE}/interaction/{interaction_id}/",
params={"format": "json"},
timeout=15)
r.raise_for_status()
return r.json()
# Example interaction ID (format: DDInter_I_XXXXXX)
interaction_id = "DDInter_I_000001" # example
try:
detail = get_interaction_detail(interaction_id)
print(f"Interaction: {detail.get('interaction_id')}")
print(f"Drug A: {detail.get('drug_a')}")
print(f"Drug B: {detail.get('drug_b')}")
print(f"Severity: {detail.get('level')}")
print(f"Mechanism: {detail.get('mechanism', 'Not specified')[:200]}")
print(f"Recommendation: {detail.get('recommendation', 'Not specified')[:200]}")
print(f"PK type: {detail.get('pharmacokinetic_type', 'N/A')}")
print(f"PD type: {detail.get('pharmacodynamic_type', 'N/A')}")
except Exception as e:
print(f"Note: Use a valid interaction ID from get_drug_interactions() results. Error: {e}")
Query 4: Check Interaction Between Two Specific Drugs
Query interactions between exactly two drugs using their DDInter IDs.
import requests
BASE = "https://ddinter.scbdd.com/api"
def check_drug_pair(drug_id_1, drug_id_2):
"""Check interactions between two specific drugs by their DDInter IDs."""
r = requests.get(f"{BASE}/between/",
params={"drug1": drug_id_1, "drug2": drug_id_2, "format": "json"},
timeout=15)
r.raise_for_status()
return r.json()
def find_drug_id(drug_name):
"""Helper: resolve drug name to DDInter ID."""
r = requests.get(f"{BASE}/drug/",
params={"drug_name": drug_name, "format": "json"},
timeout=15)
r.raise_for_status()
results = r.json()["results"]
return results[0]["ddinter_id"] if results else None
# Check warfarin + aspirin interaction
warfarin_id = find_drug_id("warfarin")
aspirin_id = find_drug_id("aspirin")
if warfarin_id and aspirin_id:
interactions = check_drug_pair(warfarin_id, aspirin_id)
count = interactions.get("count", 0)
print(f"Warfarin + Aspirin: {count} interaction(s) found")
for ix in interactions.get("results", []):
print(f" Severity: {ix.get('level')}")
print(f" Mechanism: {ix.get('mechanism', 'N/A')[:200]}")
print(f" Recommendation: {ix.get('recommendation', 'N/A')[:200]}")
else:
print(f"Could not resolve drug IDs: warfarin={warfarin_id}, aspirin={aspirin_id}")
Query 5: Filter Interactions by Severity Level
Retrieve only high-severity (major) interactions for a drug — essential for rapid clinical risk screening.
import requests
import pandas as pd
BASE = "https://ddinter.scbdd.com/api"
def get_major_interactions(drug_id):
"""Get only major-severity interactions for a drug."""
all_interactions = []
r = requests.get(f"{BASE}/interaction/",
params={"drug_id": drug_id, "format": "json", "page_size": 200},
timeout=20)
r.raise_for_status()
data = r.json()
all_interactions.extend(data.get("results", []))
# Filter to major severity
major = [ix for ix in all_interactions
if ix.get("level", "").lower() == "major"]
return major
# Get major interactions for amiodarone (known high-interaction drug)
drug_id = "DDInter_D00023" # example amiodarone ID; resolve with search_drug()
major_ixs = get_major_interactions(drug_id)
print(f"Major interactions: {len(major_ixs)}")
if major_ixs:
df = pd.DataFrame(major_ixs)
# Show drug partners and mechanism type
for col in ["drug_a", "drug_b", "level", "pharmacokinetic_type"]:
if col in df.columns:
print(f" {col}: {df[col].value_counts().head(3).to_dict()}")
df.to_csv("amiodarone_major_interactions.csv", index=False)
print("Saved: amiodarone_major_interactions.csv")
Query 6: Polypharmacy Screening for a Drug List
Screen a medication list for all pairwise major and moderate interactions.
import requests
import time
import itertools
import pandas as pd
BASE = "https://ddinter.scbdd.com/api"
def find_drug_id(drug_name):
r = requests.get(f"{BASE}/drug/",
params={"drug_name": drug_name, "format": "json"},
timeout=15)
r.raise_for_status()
results = r.json()["results"]
return (results[0]["ddinter_id"], results[0]["drug_name"]) if results else (None, None)
def check_pair(id1, id2):
r = requests.get(f"{BASE}/between/",
params={"drug1": id1, "drug2": id2, "format": "json"},
timeout=15)
r.raise_for_status()
return r.json().get("results", [])
# Medication list to screen
medication_names = ["warfarin", "aspirin", "atorvastatin", "metformin", "amiodarone"]
# Resolve to DDInter IDs
id_map = {}
for name in medication_names:
ddid, resolved_name = find_drug_id(name)
if ddid:
id_map[name] = (ddid, resolved_name)
print(f" {name:20s} → {ddid}")
time.sleep(0.3)
# Check all pairs
flagged = []
for (n1, (id1, rn1)), (n2, (id2, rn2)) in itertools.combinations(id_map.items(), 2):
ixs = check_pair(id1, id2)
for ix in ixs:
level = ix.get("level", "unknown")
if level.lower() in ("major", "moderate"):
flagged.append({
"drug_1": rn1,
"drug_2": rn2,
"severity": level,
"mechanism": ix.get("mechanism", "")[:100],
})
time.sleep(0.3)
df = pd.DataFrame(flagged)
print(f"\nFlagged interactions: {len(df)}")
if not df.empty:
print(df.to_string(index=False))
df.to_csv("polypharmacy_screening.csv", index=False)
print("Saved: polypharmacy_screening.csv")
Query 7: Visualize Interaction Network
Build and visualize a drug-drug interaction network for a set of drugs, with edges colored by severity.
import requests
import time
import itertools
import pandas as pd
import networkx as nx
import matplotlib.pyplot as plt
BASE = "https://ddinter.scbdd.com/api"
def find_drug_id(drug_name):
r = requests.get(f"{BASE}/drug/",
params={"drug_name": drug_name, "format": "json"},
timeout=15)
r.raise_for_status()
results = r.json()["results"]
return (results[0]["ddinter_id"], results[0]["drug_name"]) if results else (None, None)
def check_pair(id1, id2):
r = requests.get(f"{BASE}/between/",
params={"drug1": id1, "drug2": id2, "format": "json"},
timeout=15)
r.raise_for_status()
return r.json().get("results", [])
SEVERITY_COLORS = {"major": "#D32F2F", "moderate": "#F57C00", "minor": "#388E3C"}
# Drug list
drugs = ["warfarin", "aspirin", "atorvastatin", "fluconazole", "amiodarone"]
id_map = {}
for name in drugs:
ddid, rname = find_drug_id(name)
if ddid:
id_map[name] = (ddid, rname)
time.sleep(0.3)
# Build network
G = nx.Graph()
for name, (ddid, rname) in id_map.items():
G.add_node(rname)
edge_colors = []
for (n1, (id1, rn1)), (n2, (id2, rn2)) in itertools.combinations(id_map.items(), 2):
ixs = check_pair(id1, id2)
for ix in ixs:
level = ix.get("level", "minor").lower()
G.add_edge(rn1, rn2, severity=level, weight=3 if level == "major" else 1)
time.sleep(0.3)
# Visualize
fig, ax = plt.subplots(figsize=(9, 7))
pos = nx.spring_layout(G, seed=42, k=2)
for level, color in SEVERITY_COLORS.items():
edges = [(u, v) for u, v, d in G.edges(data=True) if d.get("severity") == level]
if edges:
width = 4 if level == "major" else 2
nx.draw_networkx_edges(G, pos, edgelist=edges, edge_color=color, width=width, alpha=0.8, ax=ax)
nx.draw_networkx_nodes(G, pos, node_color="#1565C0", node_size=1200, alpha=0.9, ax=ax)
nx.draw_networkx_labels(G, pos, font_color="white", font_size=8, font_weight="bold", ax=ax)
# Legend
from matplotlib.patches import Patch
legend = [Patch(color=c, label=l.capitalize()) for l, c in SEVERITY_COLORS.items()]
ax.legend(handles=legend, title="Severity", loc="upper right")
ax.set_title("Drug-Drug Interaction Network\n(DDInter)")
ax.axis("off")
plt.tight_layout()
plt.savefig("ddi_network.png", dpi=150, bbox_inches="tight")
print(f"Saved: ddi_network.png ({G.number_of_nodes()} drugs, {G.number_of_edges()} interactions)")
Key Concepts
Severity Classification
DDInter classifies interactions into three severity levels, following established clinical pharmacology standards:
| Severity | Code | Clinical Meaning | Action |
|---|---|---|---|
| Major | major | Potentially life-threatening or causing permanent damage | Avoid combination; use alternative |
| Moderate | moderate | May cause clinical deterioration; increased monitoring required | Use with caution; monitor closely |
| Minor | minor | Limited clinical effects; interaction is documented but rarely significant | Generally safe; monitor if symptomatic |
Mechanism Types
Interactions are classified by mechanism:
- Pharmacokinetic (PK): One drug affects the absorption, distribution, metabolism, or excretion (ADME) of the other (e.g., CYP enzyme inhibition)
- Pharmacodynamic (PD): Drugs have additive, synergistic, or antagonistic effects at the pharmacological target level (e.g., additive bleeding risk)
- Mixed: Both PK and PD mechanisms contribute
Drug Identification
DDInter uses its own sequential identifier scheme (e.g., DDInter_D00001 for Warfarin). There is no direct mapping to ChEMBL IDs, PubChem CIDs, or RxCUI without a prior name search. Always resolve drug names to DDInter IDs using the /drug/ endpoint before querying interactions.
Common Workflows
Workflow 1: Comprehensive DDI Profile for a Drug
Goal: Retrieve all interactions for a drug, stratify by severity, and export a structured report.
import requests
import time
import pandas as pd
BASE = "https://ddinter.scbdd.com/api"
def find_drug_id(name):
r = requests.get(f"{BASE}/drug/",
params={"drug_name": name, "format": "json"},
timeout=15)
r.raise_for_status()
res = r.json()["results"]
return (res[0]["ddinter_id"], res[0]["drug_name"]) if res else (None, None)
def get_all_interactions(drug_id, page_size=200):
all_results = []
url = f"{BASE}/interaction/"
params = {"drug_id": drug_id, "format": "json", "page_size": page_size}
while url:
r = requests.get(url, params=params, timeout=30)
r.raise_for_status()
data = r.json()
all_results.extend(data.get("results", []))
url = data.get("next")
params = {}
return all_results
# Build DDI profile for clopidogrel
drug_name = "clopidogrel"
drug_id, resolved_name = find_drug_id(drug_name)
if drug_id:
print(f"Drug: {resolved_name} ({drug_id})")
ixs = get_all_interactions(drug_id)
df = pd.DataFrame(ixs)
print(f"Total interactions: {len(df)}")
if "level" in df.columns:
print("\nSeverity breakdown:")
for level, grp in df.groupby("level"):
print(f" {level:15s}: {len(grp):4d} interactions")
# Major interactions table
major = df[df["level"].str.lower() == "major"].copy()
print(f"\nMajor interactions ({len(major)}):")
for _, row in major.head(10).iterrows():
partner = row.get("drug_b") if row.get("drug_a") == resolved_name else row.get("drug_a")
mech = str(row.get("mechanism", ""))[:80]
print(f" + {partner}: {mech}")
df.to_csv(f"{drug_name}_ddi_profile.csv", index=False)
print(f"\nSaved: {drug_name}_ddi_profile.csv")
Workflow 2: Pairwise Interaction Matrix for a Drug Panel
Goal: Build a severity matrix showing all pairwise interactions between a curated drug panel — useful for clinical pharmacology and formulary review.
import requests
import time
import itertools
import pandas as pd
import matplotlib.pyplot as plt
import numpy as np
BASE = "https://ddinter.scbdd.com/api"
SEVERITY_SCORE = {"major": 3, "moderate": 2, "minor": 1, "none": 0}
def find_drug_id(name):
r = requests.get(f"{BASE}/drug/",
params={"drug_name": name, "format": "json"},
timeout=15)
r.raise_for_status()
res = r.json()["results"]
return (res[0]["ddinter_id"], res[0]["drug_name"]) if res else (None, None)
def check_pair(id1, id2):
r = requests.get(f"{BASE}/between/",
params={"drug1": id1, "drug2": id2, "format": "json"},
timeout=15)
r.raise_for_status()
return r.json().get("results", [])
# Drug panel
drug_names = ["warfarin", "aspirin", "atorvastatin", "fluconazole", "metformin"]
id_map = {}
for name in drug_names:
ddid, rname = find_drug_id(name)
if ddid:
id_map[name] = (ddid, rname)
time.sleep(0.3)
resolved = {name: rname for name, (ddid, rname) in id_map.items()}
n = len(id_map)
names = list(id_map.keys())
rnames = [resolved[n] for n in names]
# Build matrix
matrix = np.zeros((n, n), dtype=int)
for i, (n1, (id1, _)) in enumerate(id_map.items()):
for j, (n2, (id2, _)) in enumerate(id_map.items()):
if i < j:
ixs = check_pair(id1, id2)
if ixs:
worst = max(SEVERITY_SCORE.get(ix.get("level", "none").lower(), 0) for ix in ixs)
matrix[i, j] = matrix[j, i] = worst
time.sleep(0.3)
# Heatmap
fig, ax = plt.subplots(figsize=(7, 6))
im = ax.imshow(matrix, cmap="RdYlGn_r", vmin=0, vmax=3)
ax.set_xticks(range(n))
ax.set_yticks(range(n))
ax.set_xticklabels(rnames, rotation=30, ha="right", fontsize=9)
ax.set_yticklabels(rnames, fontsize=9)
for i in range(n):
for j in range(n):
text = ["None", "Minor", "Mod", "Major"][matrix[i, j]]
ax.text(j, i, text, ha="center", va="center", fontsize=7)
plt.colorbar(im, ax=ax, label="Severity (0=None, 3=Major)")
ax.set_title("Drug-Drug Interaction Severity Matrix\n(DDInter)")
plt.tight_layout()
plt.savefig("ddi_severity_matrix.png", dpi=150, bbox_inches="tight")
print("Saved: ddi_severity_matrix.png")
Key Parameters
| Parameter | Endpoint | Default | Range / Options | Effect |
|---|---|---|---|---|
drug_name | /drug/ | — | any drug name string | Search term for drug name lookup |
drug_id | /interaction/ | — | DDInter_DXXXXX string | DDInter drug ID for interaction queries |
drug1, drug2 | /between/ | — | DDInter_DXXXXX strings | Both required to check a specific drug pair |
format | all endpoints | json | json | Response format; JSON only via API |
page_size | /interaction/, /drug/ | 10 | positive integer | Results per page; use 200 for bulk retrieval |
level | response field | — | major, moderate, minor | Interaction severity; filter client-side |
pharmacokinetic_type | response field | — | PK, PD, mixed | Mechanism category |
Best Practices
-
Always resolve drug names to DDInter IDs first: The API does not accept free-text drug names in interaction queries. Use
/drug/?drug_name=to obtain theddinter_id, then pass it to/interaction/or/between/. -
Handle pagination for complete interaction lists: The default page returns at most 10 results. Drugs like warfarin or amiodarone have hundreds of interactions — iterate
nextURLs untilnull:while url: data = requests.get(url, params=params).json() results.extend(data["results"]) url = data.get("next") params = {} # clear params after first request -
Use
check_pair()for targeted queries,get_interactions()for full profiles: The/between/endpoint is faster when you need one pair. The/interaction/endpoint is needed for comprehensive DDI profiling. -
Add
time.sleep(0.3)in batch loops: DDInter has no published rate limits, but polite delays prevent server-side throttling on this publicly hosted research database. -
Filter by severity client-side: The API does not support server-side severity filtering on the
/interaction/endpoint. Retrieve all interactions and filter in pandas:df = pd.DataFrame(interactions) major_only = df[df["level"].str.lower() == "major"] -
Cross-reference with clinical databases for decision support: DDInter provides evidence-based interaction records, but for clinical decisions always verify against current prescribing information in
dailymed-databaseand institutional drug interaction tools.
Common Recipes
Recipe: Quick Safety Check for a Drug Pair
When to use: Rapid single-pair interaction lookup before combining two drugs.
import requests
BASE = "https://ddinter.scbdd.com/api"
def quick_check(drug1_name, drug2_name):
"""Check interaction between two drugs by name. Returns severity or 'No interaction found'."""
def get_id(name):
r = requests.get(f"{BASE}/drug/",
params={"drug_name": name, "format": "json"},
timeout=15)
r.raise_for_status()
results = r.json()["results"]
return (results[0]["ddinter_id"], results[0]["drug_name"]) if results else (None, name)
id1, rn1 = get_id(drug1_name)
id2, rn2 = get_id(drug2_name)
if not id1 or not id2:
return f"Drug not found: {drug1_name if not id1 else drug2_name}"
r = requests.get(f"{BASE}/between/",
params={"drug1": id1, "drug2": id2, "format": "json"},
timeout=15)
r.raise_for_status()
ixs = r.json().get("results", [])
if not ixs:
return f"{rn1} + {rn2}: No interaction found in DDInter"
worst = max(ixs, key=lambda x: {"major": 3, "moderate": 2, "minor": 1}.get(x.get("level", "minor").lower(), 0))
return f"{rn1} + {rn2}: {worst.get('level', 'unknown').upper()} — {worst.get('mechanism', 'N/A')[:120]}"
print(quick_check("warfarin", "aspirin"))
print(quick_check("metformin", "atorvastatin"))
print(quick_check("warfarin", "fluconazole"))
Recipe: Count Interactions by Severity for Multiple Drugs
When to use: Generate a summary table comparing DDI burden across multiple drugs.
import requests
import time
import pandas as pd
BASE = "https://ddinter.scbdd.com/api"
def get_severity_summary(drug_name):
"""Return severity counts (major/moderate/minor) for a drug."""
r = requests.get(f"{BASE}/drug/",
params={"drug_name": drug_name, "format": "json"},
timeout=15)
r.raise_for_status()
results = r.json()["results"]
if not results:
return None
drug_id = results[0]["ddinter_id"]
# Get all interactions
all_ixs = []
url = f"{BASE}/interaction/"
params = {"drug_id": drug_id, "format": "json", "page_size": 200}
while url:
r2 = requests.get(url, params=params, timeout=20)
r2.raise_for_status()
data = r2.json()
all_ixs.extend(data.get("results", []))
url = data.get("next")
params = {}
from collections import Counter
counts = Counter(ix.get("level", "unknown").lower() for ix in all_ixs)
return {
"drug": results[0]["drug_name"],
"total": len(all_ixs),
"major": counts.get("major", 0),
"moderate": counts.get("moderate", 0),
"minor": counts.get("minor", 0),
}
drugs = ["warfarin", "amiodarone", "metformin", "atorvastatin"]
records = []
for name in drugs:
summary = get_severity_summary(name)
if summary:
records.append(summary)
print(f" {name:20s} total={summary['total']:4d} major={summary['major']:3d} mod={summary['moderate']:3d} minor={summary['minor']:3d}")
time.sleep(0.5)
df = pd.DataFrame(records)
df = df.sort_values("major", ascending=False)
df.to_csv("ddi_severity_summary.csv", index=False)
print(f"\nSaved: ddi_severity_summary.csv")
Recipe: Export All Major Interactions Across a Drug List
When to use: Build a prioritized interaction alert list for formulary review or clinical decision support.
import requests
import time
import pandas as pd
BASE = "https://ddinter.scbdd.com/api"
drug_list = ["warfarin", "aspirin", "clopidogrel", "amiodarone", "fluconazole"]
all_major = []
for drug_name in drug_list:
r = requests.get(f"{BASE}/drug/",
params={"drug_name": drug_name, "format": "json"}, timeout=15)
r.raise_for_status()
res = r.json()["results"]
if not res:
continue
drug_id, resolved = res[0]["ddinter_id"], res[0]["drug_name"]
r2 = requests.get(f"{BASE}/interaction/",
params={"drug_id": drug_id, "format": "json", "page_size": 200}, timeout=30)
r2.raise_for_status()
for ix in r2.json().get("results", []):
if ix.get("level", "").lower() == "major":
all_major.append({
"query_drug": resolved,
"interaction_partner": ix.get("drug_a") if ix.get("drug_b") == resolved else ix.get("drug_b"),
"severity": "major",
"mechanism": str(ix.get("mechanism", ""))[:200],
"recommendation": str(ix.get("recommendation", ""))[:200],
})
time.sleep(0.5)
df = pd.DataFrame(all_major).drop_duplicates()
print(f"Total major interactions across {len(drug_list)} drugs: {len(df)}")
df.to_csv("major_interactions_alert_list.csv", index=False)
print("Saved: major_interactions_alert_list.csv")
Troubleshooting
| Problem | Cause | Solution |
|---|---|---|
404 Not Found on /interaction/ | Invalid or malformed DDInter drug ID | Re-query /drug/?drug_name= to get a valid ID; format must be DDInter_DXXXXX |
count: 0 from /drug/ search | Drug name not matching DDInter nomenclature | Try INN name (e.g., "acetylsalicylic acid" not "aspirin"); try partial name |
| Interaction list is incomplete | Default page_size=10 truncates results | Set page_size=200 and iterate next URLs until null |
/between/ returns empty results | Drug pair has no curated interaction in DDInter | Absence does not mean no interaction — check dailymed-database label text |
ConnectionError or timeout | Server temporarily unavailable | Retry with timeout=30; use exponential backoff for bulk requests |
| Duplicate interactions in bulk export | Same interaction appears from both drug perspectives | Deduplicate by (drug_a, drug_b) pair after sorting drug IDs alphabetically |
JSONDecodeError | Server returned non-JSON error page | Check HTTP status code; r.raise_for_status() before parsing |
Related Skills
dailymed-database— FDA-approved drug label text including drug interaction sections (unstructured)fda-database— openFDA for adverse event reports and drug recall datadrugbank-database-access— DrugBank local XML with structured DDI and target dataclinpgx-database— PharmGKB for drug-gene (pharmacogenomics) interaction datapytdc-therapeutics-data-commons— TDC DDI benchmark datasets for ML model training
References
- DDInter Database — official web interface and documentation
- DDInter REST API — browsable API with endpoint documentation
- Xiong et al., Nucleic Acids Research 2022 — DDInter database paper describing curation methodology, data sources, and coverage
- WHO INN Drug Names — International Nonproprietary Names for resolving drug name variants