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Leads literature mining

Skill BioTender-max/awesome-bio-agent-skills/skills/openclaw/leads-literature-mining

A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.From the repository description

Install
npx -y skills add BioTender-max/awesome-bio-agent-skills --skill leads-literature-mining

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SKILL.md

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<!-- # COPYRIGHT NOTICE # This file is part of the "Universal Biomedical Skills" project. # Copyright (c) 2026 MD BABU MIA, PhD <[email protected]> # All Rights Reserved. # # This code is proprietary and confidential. # Unauthorized copying of this file, via any medium is strictly prohibited. # # Provenance: Authenticated by MD BABU MIA -->

name: leads-literature-mining description: Review Automator keywords:

  • literature-mining
  • systematic-review
  • meta-analysis
  • pubmed
  • evidence-synthesis measurable_outcome: Complete a systematic review screen of 100+ papers with >90% inclusion/exclusion accuracy compared to human baseline. license: CC-BY-4.0 metadata: author: Nature Communications 2025 version: "1.0.0" compatibility:
  • system: Python 3.9+ allowed-tools:
  • run_shell_command
  • web_fetch

LEADS (Literature Mining Agent)

A specialized LLM agent for automating systematic reviews and meta-analyses, capable of high-accuracy study selection and data extraction.

When to Use

  • Systematic Reviews: Screening thousands of abstracts for inclusion criteria.
  • Data Extraction: Pulling specific metrics (e.g., hazard ratios, sample sizes) from full-text PDFs.
  • Evidence Synthesis: Aggregating findings across multiple studies.

Core Capabilities

  1. Study Selection: Automated screening based on PICO criteria.
  2. Data Extraction: Structured extraction of study characteristics and results.
  3. Quality Assessment: Risk of bias evaluation.

Workflow

  1. Search: Query PubMed/Embase.
  2. Screen: Apply inclusion/exclusion criteria to abstracts.
  3. Extract: Parse full text for data points.
  4. Report: Generate PRISMA flow diagram and evidence table.

Example Usage

User: "Perform a systematic review on the efficacy of CAR-T in solid tumors."

Agent Action:

python -m leads.review --topic "CAR-T solid tumors" --criteria ./criteria.json
<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->

What ships with it

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