Literature
Skill BioTender-max/awesome-bio-agent-skills/skills/labclaw/literature
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.From the repository description
npx -y skills add BioTender-max/awesome-bio-agent-skills --skill literatureAssembled from the repository path, not quoted from the project. Check it against their README if it does not work.
One thing to look at
- no licenseNo license file was found in the repository. Code published without one is not open source by default, so using it at work is a question for whoever answers licensing questions where you are.
SKILL.md
1.5 KB, 344 tokens by cl100k_base, as published. Nobody here has run it
Literature Search & Review
Overview
Comprehensive academic literature search and synthesis across 15+ sources.
Capabilities
- Multi-database parallel search (PubMed, arXiv, bioRxiv, medRxiv, OpenAlex, Semantic Scholar, Crossref, DBLP, CORE, DOAJ, Europe PMC)
- Web search via Agent-Reach (Exa semantic search, Jina Reader for any URL/PDF)
- Social academic search (Twitter/X threads, YouTube talks, GitHub repos)
- Structured literature reviews with citation networks
- Knowledge gap identification
- Hypothesis generation from literature analysis
Search Strategy
- Query optimization: Short, keyword-based queries (max 7 words). PubMed-friendly syntax.
- Multi-source fan-out: Parallel queries across all sources for maximum coverage.
- Deduplication: By PMID, DOI, then normalized title.
- Reflection loop: Evaluate coverage → identify gaps → generate follow-up queries.
Citation Rules
- ZERO hallucinated citations. Every reference must come from real search data.
- Unified article schema: source_type, title, authors, year, journal, url, doi, pmid, abstract.
- Numbered references [1], [2], [3] — built only from retrieved articles.
Best Practices
- Start broad, then narrow. First search finds the landscape; follow-up queries fill gaps.
- Cross-domain search. The breakthrough paper might be in an unexpected field.
- Check preprints AND published papers. Recent findings may only be on bioRxiv/arXiv.
- Verify high-impact claims. Use Semantic Scholar's citation count to identify landmark papers.
What ships with it
Read from the repository
Just SKILL.md. No reference files, no scripts.