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Exa search

Skill BioTender-max/awesome-bio-agent-skills/skills/kdense/exa-search

Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with optional research-paper category and academic domain filtering) and URL extraction (fetching pages, articles, academic PDFs in batch). Use this skill for web-related tasks when the user wants high-quality search or scholarly filtering via category=research paper. Triggers on requests to search, look up, fetch a page, or extract an article.From its SKILL.md

Install
npx -y skills add BioTender-max/awesome-bio-agent-skills --skill exa-search

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

One thing to look at

  • no licenseNo license file was found in the repository. Code published without one is not open source by default, so using it at work is a question for whoever answers licensing questions where you are.

What its file declares

Copied from the file, not written here

The file declares its own license as MIT. That is the author’s claim about this one file, and it is not the same thing as the license GitHub reports for the repository, which is listed with the other numbers below.

SKILL.md

4.8 KB, 980 tokens by cl100k_base, as published. Nobody here has run it

Exa Web Toolkit

A skill for web-powered research tasks backed by Exa: web search and URL extraction. Exa's index combines high-quality keyword and semantic retrieval, which makes it well-suited to scientific, technical, and conceptual queries.

Routing — pick the right capability

Read the user's request and match it to one of the capabilities below. Read the corresponding reference file for detailed instructions before running commands.

User wants to...CapabilityWhere
Look something up, research a topic, find current infoWeb Searchreferences/web-search.md
Fetch content from a specific URL (webpage, article, PDF)Web Extractreferences/web-extract.md
Install or authenticateSetupBelow

Decision guide

  • Default to Web Search for topic lookups, research questions, or "what is X?" queries. When the topic is scientific or technical, pass --category "research paper" to bias toward scholarly sources, and/or an academic --include-domains allowlist. See references/web-search.md for the two-pass academic strategy.
  • Use Web Extract when the user provides a URL or asks you to read/fetch a specific page. Prefer this over the built-in WebFetch for batch extraction (multiple URLs in one call) and for academic PDFs.

Academic source priority

For technical or scientific queries, prefer academic and scientific sources:

  • Peer-reviewed journal articles and conference proceedings over blog posts or news
  • Preprints (arXiv, bioRxiv, medRxiv) when peer-reviewed versions aren't available
  • Institutional and government sources (NIH, WHO, NASA, NIST) over commercial sites
  • Primary research over secondary summaries

Two levers to steer Exa toward scholarly content:

  1. --category "research paper" biases retrieval toward scholarly sources.
  2. --include-domains with a scholarly allowlist (arxiv.org, nature.com, pubmed.ncbi.nlm.nih.gov, etc.) restricts the domain pool.

Combine both for strictly academic results. See references/web-search.md for the full pattern.

When citing academic sources, include author names and publication year where available (e.g., Smith et al., 2025) in addition to the standard citation format. If a DOI is present, prefer the DOI link.


Setup

This skill uses the exa-py Python SDK. The scripts in scripts/ declare their dependencies via PEP 723 inline metadata, so you can run them directly with uv run without a separate install step:

uv run --with exa-py python "$SKILL_PATH/scripts/exa_search.py" --help

If you prefer a persistent install:

uv pip install "exa-py>=1.14.0"

Authentication

All commands read the API key from the EXA_API_KEY environment variable. Get your Exa API key at dashboard.exa.ai/api-keys.

First, check if a .env file exists in the project root and contains EXA_API_KEY. If so, load it:

dotenv -f .env run -- uv run --with exa-py python "$SKILL_PATH/scripts/exa_search.py" "your query"

If dotenv isn't available, install it: pip install python-dotenv[cli] or uv pip install python-dotenv[cli].

If there's no .env, export the key for the session:

export EXA_API_KEY="your-key"

Verify by running any script with --help — it will exit cleanly if the key is set and auth-check runs only when a real query is made.

Tracking header

Every script in this skill sets the x-exa-integration request header to k-dense-ai--scientific-agent-skills so Exa can attribute usage from the K-Dense AI scientific-agent-skills repo to this integration. Do not remove or rename this header when adapting the scripts.


Files in this skill

  • SKILL.md — this file (routing and setup)
  • references/web-search.md — detailed web search reference with academic strategy
  • references/web-extract.md — URL content extraction reference
  • scripts/exa_search.py — CLI wrapper around client.search_and_contents
  • scripts/exa_extract.py — CLI wrapper around client.get_contents

What ships with it: 5 files

24.6 KB alongside SKILL.md, 3 of them executable

references/

scripts/

tests/

Gives 0 of the 12 instructions most web research skills give in 980 tokens

Counted across 292 of the 300 authors here whose files we hold, read 2026-09-06

  • Use web_search_exa for current information and broad discoveryin 22 of 292, across 8 files
  • Cite every claim with a sourcein 21 of 292, across 18 files
  • Configure the Exa MCP server with an API keyin 18 of 292, across 5 files
  • Use get_code_context_exa for code examples and API docsin 16 of 292, across 6 files
  • Verify exact tool names before depending on themin 13 of 292, across 4 files
  • Narrow results with site:, quoted phrase, and intitle: operatorsin 13 of 292, across 4 files
  • Adjust tokensNum lower for snippets, higher for full contextin 13 of 292, across 4 files
  • Break the topic into 3-5 research sub-questionsin 13 of 292
  • Confirm current Exa docs and exposed tool surface before usein 11 of 292, across 2 files
  • Get user confirmation after Phase 1in 10 of 292, across 9 files
  • Prefer primary sources when availablein 10 of 292
  • Verify extracted metadata against original sourcesin 9 of 292, across 5 files

Grouped from the skills themselves: near-identical wordings counted once, and counted by distinct author, so one author publishing three of these counts once. Length counted with cl100k_base; the agent that loads this file may tokenize it differently.

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