Drugcombdb
Skill BioTender-max/awesome-bio-agent-skills/skills/drugclaw/drugcombdb
Query canonical DrugCombDB combination records. Use when the user asks about drug pairs, synergy values, or cell-line-specific combination evidence.From its SKILL.md
npx -y skills add BioTender-max/awesome-bio-agent-skills --skill drugcombdbAssembled from the repository path, not quoted from the project. Check it against their README if it does not work.
One thing to look at
- no licenseNo license file was found in the repository. Code published without one is not open source by default, so using it at work is a question for whoever answers licensing questions where you are.
SKILL.md
1.0 KB, 241 tokens by cl100k_base, as published. Nobody here has run it
DrugCombDB Query Skill
Query canonical packaged DrugCombDB CSV rows.
Data
- Path:
resources_metadata/drug_combination/DrugCombDB/drugcombdb.csv - Columns:
Drug1,Drug2,Cell,Synergy,SynergyType,PMID
API
| Function | Input | Returns |
|---|---|---|
load_data(path) | CSV path | list[dict] |
search_drug(drug_name, limit) | drug name | list[dict] |
search_cell_line(cell, limit) | cell line | list[dict] |
search_drug_pair(drug1, drug2, limit) | drug pair | list[dict] |
search(entity, limit) | free text | list[dict] |
search_batch(entities, limit) | list of strings | dict[str, list[dict]] |
summarize(results, entity) | rows + label | compact text |
Usage
Run example.py directly for canonical-path demos.
What ships with it: 5 files
11.4 KB alongside SKILL.md, 4 of them executable
- drugcombdb_skill.pyruns5.1 KB
- example.pyruns3.9 KB
- __init__.pyruns146 B
- README.md1.5 KB
- retrieve.pyruns764 B