Drugcomb

Skill BioTender-max/awesome-bio-agent-skills/skills/drugclaw/drugcomb

Query the DrugComb drug combination database for cancer cell-line synergy and sensitivity data. Use whenever the user asks about drug combinations, synergy scores (ZIP/Bliss/Loewe/HSA), combination sensitivity (CSS), or wants to look up how two drugs interact in a specific cancer cell line.From its SKILL.md

Install

npx -y skills add BioTender-max/awesome-bio-agent-skills --skill drugcomb

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

One thing to look at

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SKILL.md

1.8 KB, 448 tokens by cl100k_base, as published. Nobody here has run it

DrugComb Query Skill

Search DrugComb summary records by any entity. Auto-detects type by pattern:

Input Pattern	Detected As	Match Logic
`5-FU` / `imatinib`	drug name	case-insensitive substring on `drug_row` OR `drug_col`
`A549` / `MCF-7`	cell line	case-insensitive substring on `cell_line_name`
`12345` (pure digits)	block_id	exact on `block_id`
`CID:2244`	PubChem CID	exact on `drug_row_cid` OR `drug_col_cid`

API

Function	Input	Returns
`load_drugcomb(path)`	CSV path	`list[dict]`
`columns(data)`	loaded data	column name list
`search(data, entity)`	single entity string	`list[dict]`
`search_batch(data, entities)`	list of entity strings	`dict[str, list[dict]]`
`summarize(hits, entity)`	hit list + label	compact LLM-readable text
`to_json(hits)`	hit list	`list[dict]`

Usage

See if __name__ == "__main__" block in example.py for runnable examples covering: drug name search, cell-line search, batch search, and JSON output.

Data

Source: DrugComb normalized full-package output
Key columns: drug_row, drug_col, cell_line_name, synergy_zip, synergy_bliss
Path: resources_metadata/drug_combination/DrugComb/drugcomb.csv

Citation

Zagidullin B, Aldahdooh J, Zheng S, et al. DrugComb: an integrative cancer drug combination data portal. Nucleic Acids Res. 2019;47(W1):W43–W51. doi:10.1093/nar/gkz337

What ships with it: 5 files

14.9 KB alongside SKILL.md, 4 of them executable

drugcomb_skill.pyruns5.5 KB
example.pyruns6.9 KB
__init__.pyruns138 B
README.md1.5 KB
retrieve.pyruns819 B