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Pubmed literature miner

Skill a5c-ai/babysitter/library/specializations/domains/science/scientific-discovery/skills/pubmed-literature-miner

Biomedical literature mining using PubMed/MEDLINE for systematic review supportFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill pubmed-literature-miner

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.4 KB, 156 tokens by cl100k_base, as published. Nobody here has run it

PubMed Literature Miner

Purpose

Provides biomedical literature mining capabilities using PubMed/MEDLINE for systematic review support and PICO framework analysis.

Capabilities

  • MeSH term-based search
  • PICO element extraction
  • Abstract screening automation
  • Citation deduplication
  • PRISMA flow diagram data generation
  • Full-text retrieval coordination

Usage Guidelines

  1. MeSH Terms: Use controlled vocabulary for precise searches
  2. PICO Framework: Structure searches around population, intervention, comparison, outcome
  3. Screening: Apply inclusion/exclusion criteria systematically
  4. PRISMA Compliance: Generate required flow diagram data

Tools/Libraries

  • Biopython
  • PyMed
  • NCBI E-utilities

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

Keep looking

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